Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g0519 ATGGATAATATGTTACAGCAAAAAAAGAAAACCACAGGGCGTAGGAAGATTGAGATCAAGAAGCTTGACAAAGAAACCAACAAACAAGTCACGTTCTCGAAAAGAAGACAAGGGTTATTCAAAAAAGCGAGTGAACTTTGTGTTTTATGTGATGTTCATGCAGCGATCATTGTTTTTTCTCCGGCCGACAAACTATATAGTTTTGGTCAACCAAACACCGATGCAATCCTCAATAGCTACATCAATGGAACAACTGAGTTCACGGATGCAAAGTCGATGGAAGATTCTTCAACCTATGCCGAGTACAACGGACAATATGAGGAGTCACTAAAGATGTTGGAGATGGAAAAGAAGAAACTTGCTGAAGTTGAAAATTTGGCTAAGACTTGGAATAGAGGTGATTGGTGGAATGATTCAATCGATGATATGAGCATTAATCAACTCGAACAATTTATGATTTCTCTTTATGAGTTAAGGAAGAAGCTTTTCGAAAGGGCTGATGGACTTTCGATGATGTTTCCCTTTTGA 528 0.3826 MDNMLQQKKKTTGRRKIEIKKLDKETNKQVTFSKRRQGLFKKASELCVLCDVHAAIIVFSPADKLYSFGQPNTDAILNSYINGTTEFTDAKSMEDSSTYAEYNGQYEESLKMLEMEKKKLAEVENLAKTWNRGDWWNDSIDDMSINQLEQFMISLYELRKKLFERADGLSMMFPF* 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g0519 175 SUPERFAMILY SRF-like 13 84 IPR036879 GO:0003677|GO:0046983
Tpr1g0519 175 ProSiteProfiles MADS-box domain profile. 12 72 IPR002100 GO:0003677|GO:0046983
Tpr1g0519 175 PANTHER MADS BOX PROTEIN 9 171 - -
Tpr1g0519 175 PRINTS MADS domain signature 14 34 IPR002100 GO:0003677|GO:0046983
Tpr1g0519 175 PRINTS MADS domain signature 34 49 IPR002100 GO:0003677|GO:0046983
Tpr1g0519 175 PRINTS MADS domain signature 49 70 IPR002100 GO:0003677|GO:0046983
Tpr1g0519 175 SMART madsneu2 12 71 IPR002100 GO:0003677|GO:0046983
Tpr1g0519 175 Coils Coil 103 126 - -
Tpr1g0519 175 Gene3D - 24 119 IPR036879 GO:0003677|GO:0046983
Tpr1g0519 175 CDD MADS_MEF2_like 13 84 IPR033896 GO:0000977|GO:0045944
Tpr1g0519 175 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 23 68 IPR002100 GO:0003677|GO:0046983
Tpr1g0519 175 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL62 9 171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g0519 Tpr-Chr1 4381037 4381564 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g0519 9 160 Type I MADS-box Gene Family AT5G60440 42.767 8.33e-39 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Tpr1g0519 SRF-TF 3e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g0519 - - cam:101502875 248.054