Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g0518 ATGTCGAGCGGAAGGAAAAGCCGAGGTCGCCAAAAGATTGAAATGAAAAAGATGAGCAACGAGAGCAACCTGCAAGTTACTTTCTCAAAGCGCCGTAGCGGGCTCTTCAAGAAAGCTAGCGAGCTTTGCACTCTTTGTGGTGCAGATGTTGCTCTCGTCGTATTTTCACCTGGTGAGAAGGTATTTTCCTTTGGTCACCCTGATGTTGATACGGTCATAAACCGTTATCTCTTACAGGTCCCACCTCAAAACAATACCACCATGCAATTCATTGAGGCTCACCGTAGCGCCAACCTACGTGAACTCAATACTCAGTTGACTCAAATCAACAGTGCGTTGGACATTGAGAAGAGGCGTAATGAGGAGCTGACTCACATGCGCAAGAATGCTGAGGCTCAATATTGGTGGGCTTGTCCCGTTGATGGGATGAATAGAGCTCAACTTGAATTATTCAAGAAGGCTCTGGAGGAGCTTAAGAAGCTCATTGCTCAACATGCTGCTCAGGGTGTTCCTACTCCAACCCTACCATTTTTTGCTGGAAATGGTTCATCCGCTAACATGCCGATCCATCATCAGCCAAATCCTCAACAATCTCAGATGTTTCCAGCACAATTTTTCCAGAACCCTATGTTGCAACCTCATTTGTTTGGTTTTAACAACATGGGAGGAGGAGGATATGGACCCCCTGGATTCTATTGA 699 0.4607 MSSGRKSRGRQKIEMKKMSNESNLQVTFSKRRSGLFKKASELCTLCGADVALVVFSPGEKVFSFGHPDVDTVINRYLLQVPPQNNTTMQFIEAHRSANLRELNTQLTQINSALDIEKRRNEELTHMRKNAEAQYWWACPVDGMNRAQLELFKKALEELKKLIAQHAAQGVPTPTLPFFAGNGSSANMPIHHQPNPQQSQMFPAQFFQNPMLQPHLFGFNNMGGGGYGPPGFY* 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g0518 232 ProSiteProfiles MADS-box domain profile. 8 68 IPR002100 GO:0003677|GO:0046983
Tpr1g0518 232 SMART madsneu2 8 67 IPR002100 GO:0003677|GO:0046983
Tpr1g0518 232 CDD MADS_MEF2_like 9 77 IPR033896 GO:0000977|GO:0045944
Tpr1g0518 232 Gene3D - 89 168 - -
Tpr1g0518 232 PANTHER MADS BOX PROTEIN 7 168 - -
Tpr1g0518 232 Coils Coil 148 168 - -
Tpr1g0518 232 MobiDBLite consensus disorder prediction 1 21 - -
Tpr1g0518 232 Gene3D - 20 88 IPR036879 GO:0003677|GO:0046983
Tpr1g0518 232 PRINTS MADS domain signature 10 30 IPR002100 GO:0003677|GO:0046983
Tpr1g0518 232 PRINTS MADS domain signature 30 45 IPR002100 GO:0003677|GO:0046983
Tpr1g0518 232 PRINTS MADS domain signature 45 66 IPR002100 GO:0003677|GO:0046983
Tpr1g0518 232 Coils Coil 99 133 - -
Tpr1g0518 232 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 17 64 IPR002100 GO:0003677|GO:0046983
Tpr1g0518 232 SUPERFAMILY SRF-like 9 83 IPR036879 GO:0003677|GO:0046983
Tpr1g0518 232 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL62 7 168 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g0518 Tpr-Chr1 4376878 4377576 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g0518 5 184 Type I MADS-box Gene Family AT5G60440 53.552 1.29e-61 193
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Tpr1g0518 SRF-TF 1.1e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g0518 - - mtr:MTR_1g105905 300.056
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g0518 1 4376878 4377576 Tpr1g0518 1 4376878 4377576 ECH