Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g0515 ATGGATAATGGTGTTGATGCCGGTCAGAAGCGACTAACCGAGCAAGATGCATTAGCGTTTCTTAAGGATGTAAAAGTTGCGTTCCAAGATGAGAGGGAAAAATATGATGAGTTTATAAAAATTATGAAGGATTTCAAGGCTTTCGAAATTAATACAATTGGTGTCCGATCAAGAGTGAATGAGCTGTTTAAAGGACATAAAGATTTAATTTTGGGATTCAACAACTTCCTGCCAAACGGGTATAAAATGGGTGATGGTGTTGATGCTCGTCAGAATCTAACTATGAACGATGCATTAGGGTTTCTTAAGGCCGTAAAAGTTGCTTTTCAAAATGAGAGGGAAAAGTATGATGAATTTCTAAAAATTATGAAGGATTTTCGTGCCAAAAGAACCGATACAATTGGTGTCATTTCAAGAGTTAAGGATCTATTTAAAGAGCATATACATTTAGTTTTGGGATCAACAACTTCCTGCCAAATGGATATGAATTTATCATTACTAATGAGTTGA 510 0.3529 MDNGVDAGQKRLTEQDALAFLKDVKVAFQDEREKYDEFIKIMKDFKAFEINTIGVRSRVNELFKGHKDLILGFNNFLPNGYKMGDGVDARQNLTMNDALGFLKAVKVAFQNEREKYDEFLKIMKDFRAKRTDTIGVISRVKDLFKEHIHLVLGSTTSCQMDMNLSLLMS* 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g0515 169 SUPERFAMILY PAH2 domain 90 153 IPR036600 GO:0006355
Tpr1g0515 169 ProSiteProfiles PAH domain profile. 91 161 IPR003822 GO:0006355
Tpr1g0515 169 PANTHER SIN3B-RELATED 8 82 IPR039774 GO:0003714
Tpr1g0515 169 PANTHER SIN3B-RELATED 89 154 IPR039774 GO:0003714
Tpr1g0515 169 Gene3D Paired amphipathic helix 16 78 IPR036600 GO:0006355
Tpr1g0515 169 Gene3D Paired amphipathic helix 97 156 IPR036600 GO:0006355
Tpr1g0515 169 Pfam Paired amphipathic helix repeat 33 77 IPR003822 GO:0006355
Tpr1g0515 169 Pfam Paired amphipathic helix repeat 114 151 IPR003822 GO:0006355
Tpr1g0515 169 ProSiteProfiles PAH domain profile. 10 80 IPR003822 GO:0006355
Tpr1g0515 169 SUPERFAMILY PAH2 domain 10 79 IPR036600 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g0515 Tpr-Chr1 4347413 4349614 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g0515 1 83 WRKY Transcription Factor Family AT4G12020 44.578 1.61e-15 71.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Tpr1g0515 PAH 1.5e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g0515 K11644 - cam:101497850 145.976