Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g0514 ATGAAGGATAACGGTGTTGATGATGCTGGTCAAAAGCGACTAAGCAAGAATGATGCATCAGATTTTCTTAATGCCGTAGAAATTGCGTTTCAAGATAAGAGTGAAAAGTATAGTGAGTTTTTAATGGGTGTCGGTGTTGATGATCGTCGGCTGAACGATGCATTAGCGTTTATTAAGGAGGTAAAAGTTGCTTTTCAAGATGAGAGGGAAAAATATGATGAATTTTTAAAAATTTTGAAGGATTTTGAGGCGGGAAGAACCGATTCAATTGGTGTTACGTCAAGATTGAAGGAGCTATTTGAAGAGCATATAGATTTAATTTTGGGAATCAACAACTTCTTGCCAAATGGATATGAATTTATCATTACTAATGAGTTGATTGTTCAACTTATTTCACGTATGTAG 405 0.3506 MKDNGVDDAGQKRLSKNDASDFLNAVEIAFQDKSEKYSEFLMGVGVDDRRLNDALAFIKEVKVAFQDEREKYDEFLKILKDFEAGRTDSIGVTSRLKELFEEHIDLILGINNFLPNGYEFIITNELIVQLISRM* 135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g0514 134 SUPERFAMILY PAH2 domain 50 116 IPR036600 GO:0006355
Tpr1g0514 134 PANTHER PROTEIN, PUTATIVE-RELATED 11 41 - -
Tpr1g0514 134 PANTHER PROTEIN, PUTATIVE-RELATED 50 122 - -
Tpr1g0514 134 SUPERFAMILY PAH2 domain 13 41 IPR036600 GO:0006355
Tpr1g0514 134 Pfam Paired amphipathic helix repeat 70 114 IPR003822 GO:0006355
Tpr1g0514 134 PANTHER SIN3B-RELATED 11 41 IPR039774 GO:0003714
Tpr1g0514 134 PANTHER SIN3B-RELATED 50 122 IPR039774 GO:0003714
Tpr1g0514 134 Gene3D Paired amphipathic helix 53 115 IPR036600 GO:0006355
Tpr1g0514 134 ProSiteProfiles PAH domain profile. 47 117 IPR003822 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g0514 Tpr-Chr1 4336717 4341077 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g0514 53 125 WRKY Transcription Factor Family AT4G12020 46.575 2.26e-14 67.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Tpr1g0514 PAH 6.4e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g0514 K11644 - nnu:104596135 100.908