Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g0488 ATGGATCCTTCTGAACAAAGTTGTGAAGAATGGAGTTCTCTTAGTGGATTTTACACAGCTGAAGAAGCTGATTTTATGGGCCAGTTACTTAATAACAGCCAAATTCCTCAGCATCATTATGGAAATTTCAATTTTGAAACTCCATCTACATTATGGCCTATACATGACTCCACAATAGTGAGCATGAATAACAGTTCACATTTTCCTCAAAATTATGATAATAATAGTAGTAACACTGATTTTTTGAGTTTTTTACAAGAAAGTAACTTCATTTCTGCTACTAGCAATATATCTCCTAATACTATAAATGGTGGTAACATATGTTTGAATGATCAAGGAGCTAACATTGGCTACATATCCATGGAGAATGTCAATTTTAGCACTTATAGTATTCAAGGGAATGATAGCCAACAGATAACTGAAAACACTGATGAAGAGTTTGGTCAAGAGGTTTCGGAATCAACGAAAGAGGGTATTAGCAACAACCTGGAAAAGTCAGGAAAAAGATCTAGGAGTTCTATAAAGGTACAAAAGAATAAGAAAAATGTTAAATCTAGGAAGAAACCAAAATCTGAGTTCATAAGCAACACCGAAGAGGACGAAAGTACTGATCTTCAGGAACAGAATTTGAGTTCAGAAGATGATGACTTCAATGCTTCACAAAAGGTTAAGGCAGGAGGGTCTTCAATCTTGAACCAAAATGATTCAGCAGCTCTGAAGTTAAAGGGAAAAACAAGATGTGATAAAAGTTCTGCCACTGATCCACAAGGTGTCTATGCAAAAAAAAGAAGAGAAAGAATAAATGAAAGGTTGAAAATCTTACAAAGCCTAGTCCCTAATGGAACCAAGGTTGATATCAGCACCATGCTTGAGGAAGCTGTGCAATATGTGAAGTTTTTACAGGTCCAGATTAAGCTTCTGAGCTCTGATGATCACTGGATGTATGCTCCCATTGCTTACAATGGAATGAACATTGGTCTAAACCTTGACATTAATTTTCCCAACCAAACTACCATAGAGAACATAAGAAAATAG 1035 0.3575 MDPSEQSCEEWSSLSGFYTAEEADFMGQLLNNSQIPQHHYGNFNFETPSTLWPIHDSTIVSMNNSSHFPQNYDNNSSNTDFLSFLQESNFISATSNISPNTINGGNICLNDQGANIGYISMENVNFSTYSIQGNDSQQITENTDEEFGQEVSESTKEGISNNLEKSGKRSRSSIKVQKNKKNVKSRKKPKSEFISNTEEDESTDLQEQNLSSEDDDFNASQKVKAGGSSILNQNDSAALKLKGKTRCDKSSATDPQGVYAKKRRERINERLKILQSLVPNGTKVDISTMLEEAVQYVKFLQVQIKLLSSDDHWMYAPIAYNGMNIGLNLDINFPNQTTIENIRK* 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g0488 344 CDD bHLH_AtIND_like 252 314 - -
Tpr1g0488 344 Pfam Helix-loop-helix DNA-binding domain 261 301 IPR011598 GO:0046983
Tpr1g0488 344 SMART finulus 257 306 IPR011598 GO:0046983
Tpr1g0488 344 Gene3D - 259 312 IPR036638 GO:0046983
Tpr1g0488 344 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 251 300 IPR011598 GO:0046983
Tpr1g0488 344 MobiDBLite consensus disorder prediction 172 187 - -
Tpr1g0488 344 PANTHER TRANSCRIPTION FACTOR BHLH54 8 331 - -
Tpr1g0488 344 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 257 317 IPR036638 GO:0046983
Tpr1g0488 344 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 8 331 - -
Tpr1g0488 344 MobiDBLite consensus disorder prediction 141 217 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g0488 Tpr-Chr1 4118339 4120011 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g0488 10 332 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G14760 39.167 1.66e-57 188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Tpr1g0488 HLH 4.4e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g0488 - - gmx:100817334 380.948