Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g0486 ATGGAACCTGCCCAACTGATTTTTGAAGAATGGGATTCTCTTAGTGGACAGTACACAGCTGAGGAAGCTGATTTCATGACTCAGTTCCTTTGTGATAATACAAATACCAATTTTGACATGCCATCATCATATTTTCCTTCAAATGTTTCAAATGCTAACTTTATGTGTTTTTCCCAAGGGAGTAGCACTAGCACTGATAAAACTGCTAATATCTTTTCTACCAACACATGTGATTTGGCAACAAGCATTGATTCATTGTCTATGTTTTTTTCCTTGGAAGATGCCAAATTTAGTCCACAATATTTAGATGATAGTTTAAGCAAACAGGTAAATTATGAATGCATTGATAAAGGGTCAGTTTTAGAGCTGGTTCATGCTAAGAACAATTTGCAGGCTAAGATGGAGCATGATCATGAAATGATGATGGTTTCTGAACCTCCTTCAGAAGAGGATAGTAGCCAAAACATAGAGAACTCTGCAAAAAGATTTAGGAGCTCAATAGAGGTCTCAGAAAACATGAGGAATGTTAGAAAGTGTCCAAAATCTGCTTATACGAACAACAATGAAAATGGCATACAGTGGCACGGGTTCAGCAACTGTTTTTCTAAGGTTGACTCAAATGCTTATGTGGAGCTAAATGGAAGAACATCTCCAAGTCTAAGCCCAAAAAAACCTGAAGCACCTAATTTATGTAAAAAATCAAGAGCAACAAATGGTCCTGCCACTGATGCACAAAGCATTTATGCTAGAAGGAGAAGAGAAAGAATAAATGAAAGGTTGAGAATCTTACAAACCCTTGTCCCAAATGGAACCAAGGTTGATATTAGCACAATGCTTGAGGAAGCTGTCCAATATGTGAAGTTTTTGCAACTTCAAATTAAGGTTCTGAGCTCTGAAGATATGTGGATGTATGCTCCAATTGCTTATAATGGAATTAACATTGGATTAGATCTCAGCTTTAATTAA 966 0.3665 MEPAQLIFEEWDSLSGQYTAEEADFMTQFLCDNTNTNFDMPSSYFPSNVSNANFMCFSQGSSTSTDKTANIFSTNTCDLATSIDSLSMFFSLEDAKFSPQYLDDSLSKQVNYECIDKGSVLELVHAKNNLQAKMEHDHEMMMVSEPPSEEDSSQNIENSAKRFRSSIEVSENMRNVRKCPKSAYTNNNENGIQWHGFSNCFSKVDSNAYVELNGRTSPSLSPKKPEAPNLCKKSRATNGPATDAQSIYARRRRERINERLRILQTLVPNGTKVDISTMLEEAVQYVKFLQLQIKVLSSEDMWMYAPIAYNGINIGLDLSFN* 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g0486 321 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 19 319 - -
Tpr1g0486 321 SMART finulus 246 295 IPR011598 GO:0046983
Tpr1g0486 321 PANTHER TRANSCRIPTION FACTOR BHLH139-LIKE 19 319 - -
Tpr1g0486 321 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 241 307 IPR036638 GO:0046983
Tpr1g0486 321 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 240 289 IPR011598 GO:0046983
Tpr1g0486 321 Pfam Helix-loop-helix DNA-binding domain 250 290 IPR011598 GO:0046983
Tpr1g0486 321 MobiDBLite consensus disorder prediction 215 245 - -
Tpr1g0486 321 Gene3D - 242 306 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g0486 Tpr-Chr1 4108867 4111033 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g0486 10 316 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G33880 35.897 1.87e-48 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Tpr1g0486 HLH 2.4e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g0486 - - gmx:100816788 308.916
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g0486 1 4108867 4111033 Tpr1g0486 1 4108867 4111033 ECH
Tpr2g6079 2 73865811 73867634 Tpr1g0486 1 4108867 4111033 PCT