Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g0485 ATGGAACCTGCCCAATTGATTTTTGAAGAATGGAATTCTCTTAGTGGACAGTACACAGCTGAGGAAGCTGATTTCATGTCTCAGTTCCTTGGTGGTGATGGAAATACAAATTTTGGCATGCCATCTTATTTGCCTTCAAATGTTGCAAATGCTAATTTTATGTGTTTCTCCAAAGGGAGTAGCATTAGCACTGATAATAGTCCTAATACACATTCCACCACCACAAGTAGTGGAACCTACTCATGTGATTTGGCAACAAATATTGATTCCTTGATTTTTTGTTTGGGAGATGCCAAACAAATAAATTATGAAAGCATTGATCATGAAGGGTCAGGTTTAGAACTAGTGAGACCGGTTCTTGCTGCCGAGATGGAGAACACTGCAAAAAGATATAGGAGCTCAATAGAGGTCTCAAAAAACATGAGGAATGTTAAGAGGTGTCCAAATTCTGCATCTATGAGTAACAATGAAGAGAGCCTAATGTGGCATGGCTCCAAAAACTGTTTTTCACAGGTTGATTCATCAAATGCTTCAATAGAGCTAAATAGAGGAACATCTCCAAGTCTAAGCCCAAGAGAACCTAAAGCACCTAATTTATATAAAAAATCAAAAGCAACAAGTGGTCTTGCCACTGATGCACAGAGCATTTATGCAAGAAGGAGAAGAGAAAGAATAAATGAAAGGTTGAGAATCTTGCAAACCCTTGTCCCAAATGGAACTAAGGTTGATATTAGCACAATGCTTGAGGAAGCTGTCCAATATGTGAAATTTTTGCAGCTTCAAATTAAGCTTCTGAGTTCTGAAGATATGTGGATGTATGCTCCAATTGCTTACAATGGAATAAACATTGGATTAGACCTCAGCTTTAATTAA 873 0.378 MEPAQLIFEEWNSLSGQYTAEEADFMSQFLGGDGNTNFGMPSYLPSNVANANFMCFSKGSSISTDNSPNTHSTTTSSGTYSCDLATNIDSLIFCLGDAKQINYESIDHEGSGLELVRPVLAAEMENTAKRYRSSIEVSKNMRNVKRCPNSASMSNNEESLMWHGSKNCFSQVDSSNASIELNRGTSPSLSPREPKAPNLYKKSKATSGLATDAQSIYARRRRERINERLRILQTLVPNGTKVDISTMLEEAVQYVKFLQLQIKLLSSEDMWMYAPIAYNGINIGLDLSFN* 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g0485 290 MobiDBLite consensus disorder prediction 182 205 - -
Tpr1g0485 290 PANTHER TRANSCRIPTION FACTOR BHLH84-LIKE 119 288 - -
Tpr1g0485 290 Pfam Helix-loop-helix DNA-binding domain 219 259 IPR011598 GO:0046983
Tpr1g0485 290 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 213 276 IPR036638 GO:0046983
Tpr1g0485 290 SMART finulus 215 264 IPR011598 GO:0046983
Tpr1g0485 290 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 119 288 - -
Tpr1g0485 290 Gene3D - 211 275 IPR036638 GO:0046983
Tpr1g0485 290 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 209 258 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g0485 Tpr-Chr1 4095018 4097010 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g0485 144 285 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G33880 59.441 1.21e-47 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Tpr1g0485 HLH 2e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g0485 - - aprc:113871866 304.679