Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g0480 ATGGCTTCAGGATCTGTGGAAGGAGAACAATCATCACTCGCTGATGATTATGATGCCTTGATTTCAACCACTGATGTTGAGCTTCTCAAGCGAGCTTGGCGTAATGAAAAGGCAGCACCTGAGATTCTTCGTTTTGAATCTGATTTGATCACCCGTGTCAGAGAACAGATTGAATTAATGGAAGAAACCGTGGAGGAGAAATTGACTGTTGGTACCGACCCTCTTTCAGTATCTCTGTATCAGATGGACTTAGATAGAACCTTATTTCTATTAAGATCATATCTTCGCATCCGCATCCTGAAGATCGAAAAGTACATGTTCCACATCCGAAAAACTGAAGAACTTTGGAACAGGCTTTCTAAGGATGAGAAATTTTTCACTGAAAGGTGCACAGATGACCTAAAGAAACATCTGGAGGAGAGTGTTCTATCAAAACTGCCTGAAAATTATCAGTCTTATGAGAGGCAATCTGTAATCAGTGAAGAGGATGACATGGTTCCAGAACCACGACTAGACACATTTGTTTTGTGTAGAAGTAAAGAATATCTCACAGGCATTCAACTTGAAGATGGACCTGTTGATGACAGGTCGAAGCTGTTTGAAATGGAGCCTGATGTCCTTTACTTTATATGTTACAAATCTATAAAGCCGCTCGTAGAGAGTGGCAAAATTGATCTACTATGA 684 0.4035 MASGSVEGEQSSLADDYDALISTTDVELLKRAWRNEKAAPEILRFESDLITRVREQIELMEETVEEKLTVGTDPLSVSLYQMDLDRTLFLLRSYLRIRILKIEKYMFHIRKTEELWNRLSKDEKFFTERCTDDLKKHLEESVLSKLPENYQSYERQSVISEEDDMVPEPRLDTFVLCRSKEYLTGIQLEDGPVDDRSKLFEMEPDVLYFICYKSIKPLVESGKIDLL* 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g0480 227 SUPERFAMILY PriA/YqbF domain 171 227 - -
Tpr1g0480 227 Pfam DNA replication complex GINS protein SLD5 C-terminus 169 227 IPR031633 -
Tpr1g0480 227 PANTHER SLD5 PROTEIN 10 227 IPR008591 GO:0006261
Tpr1g0480 227 CDD GINS_A_Sld5 25 143 IPR038749 -
Tpr1g0480 227 Gene3D - 12 217 - -
Tpr1g0480 227 SUPERFAMILY GINS helical bundle-like 22 157 IPR036224 -
Tpr1g0480 227 PIRSF GINS_Sld5 1 227 IPR008591 GO:0006261
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g0480 1 174 Core DNA Replication Machinery Family AT5G49010 62.644 6.92e-70 210
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g0480 K10735 - gmx:100784291 345.895