Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g0478 ATGAGTTGCAACGGTTGCCGTGTGTTGAGAAAAGGATGCAGTGAGGATTGCATGCTGAGGGATTGCCTAACATGGATACAAAATCCACAAGCACAGGCTAACGCCACGGTGTTCGTCACCAAATTCTTCGGCCGTGCAACCCTCTTGTCTTTCCTTTCCTCCGTTCTCCCCAACCAAAGACCCGCTATGTTCCAGTCACTTATGTATGAAGCTGTGGGGAGGACTATAAATCCAGTGAATGGAGCAGTGGGGATGTTGTGTACTGGCAAGTGGCAATTCTGTCAATTAGGTGTGGAGCAAGTTTTGAGTGGTAGCGGTGGCGCGTTGACACCGCTGCCTGATCTTCATGAGAGTAGTGAAAAGGGAAGTAGTTCTGGTGGTGATCATCAACAACAGGTAATGATGGAAGAAACACAATCATCTAGGTTGATGTCACAGTCAGAGAGGTGCCACCAAGCAAAAAAGCAACGTATGGAGACACAGTCCGAAGAATCAGAGGAGTCTTCTACGTTGGGAAGTAGAACAGAAACAACAGATGATTGTGTTTATGTTTATGCTAATTCTCAAACTCATCAAAGGAAGCAGCAGCAGCAGCTCCTTACACTATTCTTATAA 615 0.4618 MSCNGCRVLRKGCSEDCMLRDCLTWIQNPQAQANATVFVTKFFGRATLLSFLSSVLPNQRPAMFQSLMYEAVGRTINPVNGAVGMLCTGKWQFCQLGVEQVLSGSGGALTPLPDLHESSEKGSSSGGDHQQQVMMEETQSSRLMSQSERCHQAKKQRMETQSEESEESSTLGSRTETTDDCVYVYANSQTHQRKQQQQLLTLFL* 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g0478 204 MobiDBLite consensus disorder prediction 117 147 - -
Tpr1g0478 204 Pfam Lateral organ boundaries (LOB) domain 2 100 IPR004883 -
Tpr1g0478 204 MobiDBLite consensus disorder prediction 116 176 - -
Tpr1g0478 204 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 204 - -
Tpr1g0478 204 MobiDBLite consensus disorder prediction 148 164 - -
Tpr1g0478 204 ProSiteProfiles LOB domain profile. 1 107 IPR004883 -
Tpr1g0478 204 PANTHER LOB DOMAIN PROTEIN 1 204 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g0478 Tpr-Chr1 4026805 4027894 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g0478 1 115 AS2 family AT5G67420 66.957 5.70e-54 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Tpr1g0478 LOB 3.1e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g0478 - - mtr:MTR_1g106420 250.366
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g0478 1 4026805 4027894 Tpr1g0478 1 4026805 4027894 ECH
Tpr2g5699 2 66108245 66109712 Tpr1g0478 1 4026805 4027894 PCT