Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g0476 ATGGGACACTCTAACGTCTGGAACTCTCACCCCAAGACCTATGGTCCTGGTTCTCGCACTTGCCGTGTGTGCGGTAATTCACATGGATTGATCAGGAAGTATGGCCTTATGTGCTGCAGGCAATGCTTCCACAGCAATGCCAAGGAAATTGGTTTCATTAAGTACCGCTGA 171 0.4912 MGHSNVWNSHPKTYGPGSRTCRVCGNSHGLIRKYGLMCCRQCFHSNAKEIGFIKYR* 57
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g0476 56 PANTHER 40S RIBOSOMAL PROTEIN S29 1 55 IPR039744 GO:0003735|GO:0008270
Tpr1g0476 56 PANTHER RIBOSOMAL PROTEIN S14P/S29E FAMILY PROTEIN-RELATED 1 55 - -
Tpr1g0476 56 Gene3D 30s Ribosomal Protein S14; Chain N 1 56 IPR043140 -
Tpr1g0476 56 Pfam Ribosomal protein S14p/S29e 7 56 IPR001209 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g0476 Tpr-Chr1 4007526 4008835 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g0476 1 56 Cytoplasmic Ribosomal Protein Gene Family AT4G33865 92.857 1.18e-34 109
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g0476 K02980 - han:110916663 130.954
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr2g6077 2 73854946 73856087 Tpr1g0476 1 4007526 4008835 PCT