Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g0469 ATGGGTGACACTGTCCATGAAGAGCATCACACAGCTAGTGCACCTGTTGCTTCTCCTAAGAGGGACATAGCTTTGTTTGAAGGGGACAAAGATTTTGAGCCACCCAATGGCATTGAATTTGAATCTCATGAAGCGGCATATACATTTTATCAAGAATATGCCAAATCTATGGGATTCACTACTTCAATTAAAAACAGCAGACGATCAAAGAAGACAAAAGAATTCATTGATGCCAAATTTGCATGCTCTAGGTATGGAGTTACACCTGAGTCTGATAGTGGTAGCAGTCGAAGACCAAGTGTAAAGAAGACAGATTGCAAAGCTTGCATGCATGTGAAGAAAAAGCCGGATGGAAAGTGGACCATTCATGAATTTATAAAGGATCACAATCATGAACTTTTACCAGCTTTGGCATATCATTTTCGGATTCATAGAAATGTGAAGTTAGCTGAAAAGAATAATATTGATATCTTGCATGCCGTTAGTGAACGCACAAGAAAGATGTATGTTGAAATGTCAAGACAATCTGGTGGCTGTCAAAACATTGGGTCTATTGTGGGTGATATGAATTATCAGTTTGACAGAGGCCAGTTTCTGGCTTTGGATGAGGGAGATGCGCAAGTTATTCTGGAGTACTTCAAGCACATTCAAAAGGATAATCCCAACTTCTTCTATTCTATAGATTTAAACGATGAACAACGTTTAAGAAATCTATTTTGGATTGATTCAAAAAGCATTGATGATTATCTCAGCTTCAATGATGCAGTTTCATTTGATACTACCTACATAAAAAGCAATGAAAAGTTGCCTTTTGCTCCTTTTATTGGAGTGAACCATCACTCTCAACCTATATTGCTTGGATGTGCATTGATTGCAGATGAAACTAAGCCAACTTTTGTTTGGTTACTGAAGACATGGCTTAGAGCGATGAGAGGGAAAGCTCCCAAAGTTATAGTCACTGATCAAGACAAAGCCTTGAAGGAAGCAATTGAAGAAGTATTCCCAAACGTACGGCATTGCTTTTCTCTTTGGCACATATTGGAAAAGATACCTGAAAATCTGTCTTTTGTGATAAAACAGTATAAGAACTTCTTGCCGAAGTTCAACAATTGCATTTTTAAGTCGTGGACAGATGAACAGTTTGACTTGAGCTGGTGGGAAATGGTGACTATATTTGAACTCCATGATGATGTATGGTTTCATTCATTGTATGAAGACCGGAAAAAGTGGGTACCAACATACATGGGGGATGTCTTTTTAGCTGGAATGTCCACACCTCAACGTTCCGAAAGTATGAACTCTTTCTTTGACAAATATATTCATAAGAAAATCACCTTTAAAGAGTTTGTGAAACAATATGGGTTAATTCTTCAGAATAGGTATGACGAGGAAGCCATTGCAGATTTTGATACATTGCACAAACAGCCTGCACTTAAATCTCCTTCACCTTGGGAAAAACAAATGTCAACAGTTTACACACATGCAATATTTAAGAAATTCCAAGTTGAAGTGTTGGGTGTAGCTGGTTGTCAATCTAGGATAGAGGTTGGAGATGGAACTGTTGCGAAATTTATAGTTCAAGATTATGAGAAGGATGAAGAATTTTTGGTAACTTGGAATGAGTTGAGCTCAGAGGTCACTTGCTTCTGTCGATTGTTTGAATATAAAGGTTTCCTTTGCAGACATGCATTGAGTGTTCTCCAACGTTGTGGTTGTTCCAGTGTTCCATCTCAATATATCAAGAAGAGGTGGACCAAAGATGCCAAAATTAGGGAACCCATCATAACAGATAGTACAAGAAGGGTACAAACTAGGGCTCAACGTTATAATGATTTGTGCAAACGAGCTATTGAGTTGAGTGAAGAAGGATCATTATCTGAAGAGAGTTACAATGTTGCTATCCGTACACTTGTCAGTTGCCTGAAGAACTGTGTACTTGTAAATAACTCTAACGACAATGGCGCAGAAGCTGGCAACAATGGTTACAGTCTTCGTGAAGCAGAAGAAAGTCAGTGTACCCTTGCTTTGAAACCAAGTAAGAAGAGGAACACAACCAGGAAAAGAAAGATGCAACAAGAGCAGAATCCTGTACTTGTCGATGCTCAAGATAGCCTACAACAAATGGATAATCTTACCTCGGATGCAATGAACCTTACTGGATATTATGGTACTCAGCAGAATGTGCAAGGACTGCATGTACAGTTGAACTTAATGGAGCCACCTCAGGATGGTTACTATGTTAATCAGCAGAGCATGCAAGGCCTCGGTCCATTGAATTCTATGGGTCCGAGCCATGACGGATTTTTTGGAACACAACAAAGCATTCATGGGATGGGAGGGCAATTGGAATATCGCCCAACAACCACTTTTGGATATAGCCTTCAGGATGAGCATGATCCACACTTTCACAGCAACAATTCAAGAAATACTTAG 2433 0.3921 MGDTVHEEHHTASAPVASPKRDIALFEGDKDFEPPNGIEFESHEAAYTFYQEYAKSMGFTTSIKNSRRSKKTKEFIDAKFACSRYGVTPESDSGSSRRPSVKKTDCKACMHVKKKPDGKWTIHEFIKDHNHELLPALAYHFRIHRNVKLAEKNNIDILHAVSERTRKMYVEMSRQSGGCQNIGSIVGDMNYQFDRGQFLALDEGDAQVILEYFKHIQKDNPNFFYSIDLNDEQRLRNLFWIDSKSIDDYLSFNDAVSFDTTYIKSNEKLPFAPFIGVNHHSQPILLGCALIADETKPTFVWLLKTWLRAMRGKAPKVIVTDQDKALKEAIEEVFPNVRHCFSLWHILEKIPENLSFVIKQYKNFLPKFNNCIFKSWTDEQFDLSWWEMVTIFELHDDVWFHSLYEDRKKWVPTYMGDVFLAGMSTPQRSESMNSFFDKYIHKKITFKEFVKQYGLILQNRYDEEAIADFDTLHKQPALKSPSPWEKQMSTVYTHAIFKKFQVEVLGVAGCQSRIEVGDGTVAKFIVQDYEKDEEFLVTWNELSSEVTCFCRLFEYKGFLCRHALSVLQRCGCSSVPSQYIKKRWTKDAKIREPIITDSTRRVQTRAQRYNDLCKRAIELSEEGSLSEESYNVAIRTLVSCLKNCVLVNNSNDNGAEAGNNGYSLREAEESQCTLALKPSKKRNTTRKRKMQQEQNPVLVDAQDSLQQMDNLTSDAMNLTGYYGTQQNVQGLHVQLNLMEPPQDGYYVNQQSMQGLGPLNSMGPSHDGFFGTQQSIHGMGGQLEYRPTTTFGYSLQDEHDPHFHSNNSRNT* 811
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g0469 810 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 13 725 IPR031052 GO:0006355
Tpr1g0469 810 SMART 26again6 546 573 IPR006564 GO:0008270
Tpr1g0469 810 MobiDBLite consensus disorder prediction 1 25 - -
Tpr1g0469 810 MobiDBLite consensus disorder prediction 1 15 - -
Tpr1g0469 810 Pfam FAR1 DNA-binding domain 48 135 IPR004330 -
Tpr1g0469 810 Pfam SWIM zinc finger 537 570 IPR007527 GO:0008270
Tpr1g0469 810 ProSiteProfiles Zinc finger SWIM-type profile. 535 571 IPR007527 GO:0008270
Tpr1g0469 810 MobiDBLite consensus disorder prediction 677 700 - -
Tpr1g0469 810 PANTHER PROTEIN FAR-RED ELONGATED HYPOCOTYL 3 13 725 - -
Tpr1g0469 810 Pfam MULE transposase domain 256 348 IPR018289 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g0469 Tpr-Chr1 3967017 3971962 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Tpr1g0469 MULE 1.1e-25 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g0469 - - gmx:100814153 1457.58