Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g0468 ATGACGAGCGCTTCAGAACTATTCTACACCAGGAGACACCGATTAGGTCGAAATGATATCGATTCATCTTTCCAATCTTCACCTACTCCCGATTTCCATCCCCACCGCATTCACGATTCCGACGATGACGATTCTCTCCGTATCCGCCGCCACGTCCGCCGTCCCCGTCACCCGGAGCGTGCACCTGATAGATTTGATGGGAGGTATCGTCGGGCGCTATTAAATGATAGTGTTGATTCTGTAGAAACTGTGAGACGTGGTGAAAGATTACCTGTAGATGTGAGACTTGCGCGAGAAAGACTCCTTCAGAGGTTAAGAGGAGGAGGAGGCAGTGAAAGATTACCTGTAGATAGAATCAGGCAATATGATTGGAATTCATGGGATGATGATCAAGAAAGTGAGTTATCAAGTGAAATTCCATCTGTGGACTCTTTAGTTAATGACTTGACTTCTCAAATGGCAAGGTTCCGACTCTTGCACTCACCAACCAAAAAGCCACCCGGACTCACTCAGGAGGCGCTGGACTGTTTACATGTTAAAGTTTTTAGCAGCAGTGAGACCTCATCAGAATCCAGGGTACTACAGGATTGTGGGATATGCTTGGAATCTTTCACAGACGGAGATAAACTAATCCATTTGCAATGTGGACATAAATTTCACTCTGCTTGTTTGGATCCTTGGATTCGCAGTTGTGGAGACTGTCCATTCTGTCGAAGATGTATAGTTGTGAATAGTCAGTCACCTTCCATAAAGTGA 756 0.455 MTSASELFYTRRHRLGRNDIDSSFQSSPTPDFHPHRIHDSDDDDSLRIRRHVRRPRHPERAPDRFDGRYRRALLNDSVDSVETVRRGERLPVDVRLARERLLQRLRGGGGSERLPVDRIRQYDWNSWDDDQESELSSEIPSVDSLVNDLTSQMARFRLLHSPTKKPPGLTQEALDCLHVKVFSSSETSSESRVLQDCGICLESFTDGDKLIHLQCGHKFHSACLDPWIRSCGDCPFCRRCIVVNSQSPSIK* 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g0468 251 CDD RING-H2_PA-TM-RING 196 238 - -
Tpr1g0468 251 SUPERFAMILY RING/U-box 196 244 - -
Tpr1g0468 251 MobiDBLite consensus disorder prediction 19 45 - -
Tpr1g0468 251 Pfam Ring finger domain 196 238 IPR001841 -
Tpr1g0468 251 PANTHER SI:CH211-59O9.10 1 243 - -
Tpr1g0468 251 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHY1A-RELATED 1 243 - -
Tpr1g0468 251 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 156 242 IPR013083 -
Tpr1g0468 251 SMART ring_2 197 237 IPR001841 -
Tpr1g0468 251 ProSiteProfiles Zinc finger RING-type profile. 197 238 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g0468 Tpr-Chr1 3960861 3963949 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g0468 1 242 C3H Transcription Factor Family AT1G49850 40.530 2.31e-41 140
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g0468 - - gmx:548042 257.299