Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g0467 ATGCTGCGTTTGTGCTTCAACCCTCTCGATTATTGCTTCCGACGCCGTGGTGCCTCTGATTTTCTTCTCTGGCATACCGACTTAAAACCTCATGCTTCCGGTGATTTCTCTATAGCCGTCGCTCAGGCTAATTACAGCCTTGAAGATCAGAGTCAAGTCTTTACCTCACCTTCCGCTACCTATGTCGGTGTTTACGACGGTCATGGTGGTCCTGAAGCTTCTAGATTCGTCAATAACCGTCTCTTCCCTTATTTGCACAAATTTGCATCTGAGCAAGGGGGATTATCAGCAGATGTGATAAAAAAAGCGTTTAGTGCGACCGAGGAGGATTTTTTGCATTTGGTTAAGTTGTCGTTACCAGTTAGTCCACAAATTGCGTCTGTTGGATCGTGTTGTCTTCTCGGTGCAATTTCTAATAATGTGTTGTATGTGGCTAACCTCGGAGACTCCAGAGTTGTTCTTGGCAGGAGGTGTTCTGAGAACAAGAATTATCCGGTGGAGGCTATCCGCTTGTCAACAGATCATAATGTAGCAGACGAGGAGGTGAGGAGAGAGGTTGAGGCTCTCCACCCTGATGATTCACACATTGTGGTTTATACTCGTGGAGTTTGGAGGATTAAAGGCATCATACAGGTGTCTAGATCCATCGGTGATGTGTATTTGAAGAGACCGGATTTCTACAGAGACCCCATTTTTCGGCAATTTGCAAGTCCTATTCCTTTGAAGCGTCCAGTTATGACAGCTGAACCATCAGTCATTATTAGGGAGCTAGAGTCAGATGATTTATTCTTGATATTTGCATCGGATGGCCTTTGGGAACAATTAAGTGATGAAGCCGCAGTTGAGATTGTTTTCAAATATCCAAGAGCCGGAATTGCCAAGAGACTAGTAAGAGCTGCTCTTCAGGAAGCTGCAAAGAAAAGAGAGATGAGATATGCTGACATAAAGAAAATCGACAAAGGAATTAGACGACACTTCCATGACGATATCACTGTTATTGTAATCTATCTTGATCACCATGGAAGCTCTTCTAGTGATGGTGAATTTAAGCAAACTGCTGTTGGCTATACAACTGCCCCTGTTGATATATTTTCTCTAAATGCTGATGAAGCTGAGAAGAGTATGCTTGGTTCAGTTGCCTAA 1143 0.4357 MLRLCFNPLDYCFRRRGASDFLLWHTDLKPHASGDFSIAVAQANYSLEDQSQVFTSPSATYVGVYDGHGGPEASRFVNNRLFPYLHKFASEQGGLSADVIKKAFSATEEDFLHLVKLSLPVSPQIASVGSCCLLGAISNNVLYVANLGDSRVVLGRRCSENKNYPVEAIRLSTDHNVADEEVRREVEALHPDDSHIVVYTRGVWRIKGIIQVSRSIGDVYLKRPDFYRDPIFRQFASPIPLKRPVMTAEPSVIIRELESDDLFLIFASDGLWEQLSDEAAVEIVFKYPRAGIAKRLVRAALQEAAKKREMRYADIKKIDKGIRRHFHDDITVIVIYLDHHGSSSSDGEFKQTAVGYTTAPVDIFSLNADEAEKSMLGSVA* 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g0467 380 Pfam Protein phosphatase 2C 56 306 IPR001932 -
Tpr1g0467 380 CDD PP2Cc 48 337 IPR001932 -
Tpr1g0467 380 Gene3D - 26 346 IPR036457 -
Tpr1g0467 380 PANTHER PROTEIN PHOSPHATASE 2C 63-RELATED 4 375 - -
Tpr1g0467 380 PANTHER ALPHABET, ISOFORM E-RELATED 4 375 - -
Tpr1g0467 380 SUPERFAMILY PP2C-like 44 339 IPR036457 -
Tpr1g0467 380 ProSiteProfiles PPM-type phosphatase domain profile. 35 337 IPR001932 -
Tpr1g0467 380 ProSitePatterns PPM-type phosphatase domain signature. 61 69 IPR000222 GO:0043169
Tpr1g0467 380 SMART PP2C_4 29 335 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g0467 Tpr-Chr1 3941689 3944036 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g0467 17 363 PP2C-type Phosphatase Gene Family AT3G51370 54.648 4.26e-141 404
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g0467 - K01102 gmx:100812137 659.448
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g0467 1 3941689 3944036 Tpr1g0467 1 3941689 3944036 ECH