Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g0459 ATGAATATTTCAACTGGAAATTTGGCAAGCAATAACGATTGTACCACTGAGAAGATGGGAACTGAACACTGTGATTTGTCTAAAAAAGCAGCTCAGATCGACAATGAATGTTTAGACAACGAACAAAAAGTGCTTGGTGCTGTGTTAACCGATTCTGTTATCAATGAAAAGTCAAATGAAGTTTCTGTGAGTATGACTGAGAATTCTGTTATTGAACTGCCTGAACCACCTCGTCCTTGCTCAGAAAATACTTGTCAGACTTTAGAAAGTTCATGTCTTCAACAAAGTACCTCTGAACAAGTTTGCTTATCTGGGGATAAATCAGAAATTAAATGTCCTCAAAATGTTGAAAATGAAGCTGGAGAAATGAGTGATGCAGTAACTCCCTTTGTTGTTGTTGAAGAGCAAACACAATCTGTTCCTGCTCAAGTGAACTCGGATTCTGTGAACGAGCTATTGGATCCACCTTCTGGAGATGTTAAGGAAAATATTAAAAACGTATCTGGTGAAACGAGTGATGTAGTAACTGGGTTTGTTGAAGACCATACGGAATCTGTTCCTGCTCAAGTGGACACAGATTCTGTGAACGAGCTACTCGATACGCTTTCTGGAGATATTACGAAAAATATTAGTTCAAAAAAAGAACCTGGTGACAAGACTGATGTAGTAACTGGGTTTGTTGAAGACCATACGGAACCCGTTCCTGCTCAAGTGAACACAGATTCTGTGAATGAGCCACTCGATACACCTTCTGGAGATGTTACGAAAAATATTAGTTCTAAAAACGAACCTGGTGAAATGAGTGATTTAGTAACTGGGTATGTTGAAGATCATAAGCAATCCGATCCTGCTCAAGTCAACACAGATTCTGTGAACGAGCCACTCGATACGGCTTCTGGAGATGTTACTAAAAATATTAGTTCTAAAAACGAACCTGGTGAAATGAGTGACGCAATAACTGGCCTTGTTGAAGACCAAACGCAATCCGTTCCTGCTCAAGTGAACACTAATTCTTGGAAGAATGAGATACTCGATATGCCTTCTGGAGACGCTGCAAAAAATATTAGTTCTGATTGTTCAGAAAGAAAGTCTAATAACCCGCCTCAGTTGCGAGAGAAACATGCATATAAAAAAACCTCAAAATTATCGAAGAAGTATATATTAAGGTCGTTAGGAAGCAGTGACAGAACTCTGCGGTCAAGGACAAAAGATAATAAACCTAAAGATCCTGAACCAATTAATACTGTTGCTGATGTTAATAATGATGAAACGAAGACAAAAGAAAGGAAGAAGAAGAAGAAAAAGACGAGAAAAGAGGGATTTAATGATCAATTTTCTAGAATTAGAGCTCAATTGAGATATTATCTGAACCGAATAAGCTACGAGCAAAACTTGATTGATGCTTATTCTGCCGAGGGATGGAGAGGAAGCAGTATGGAAAAACTAAAGCCTGAGAAGGAGATTCAACGGGCTAAGTCTGAAATTCTTCGACGTAAATTAAAAATTAGGGATCTATTTCAAAATTTGGATTCATTGTGCGCTGAAGGAAGGCTTCCTGAATCTTTGTTTGATTCCGAGGGAGAGATTGATAGTGAGGATATATTTTGTGCAAAATGCCAGACCAAAGTGTTGGCCACTAATAATGATATAATTCTCTGTGATGGTGCTTGTGACCGTGGATATCACCAGCTCTGTTTGGATCCTCCATTGTTAACCGAAGACATACCACCTGGCGATGAGAGTTGGTTATGCCCTGGATGTGATTGCAAAGATGACTGCATCGAACTTGTTAATGACTTGTTAGGGACAAGTCTCTCTCTTACCGACACCTGGGAGAGGGTTTTTCCTGAAGCAGCTACAGCTGCTGGAAGTATCTTGGATCACAACTTGGGACTTCCTTCAGACGATTCTGATGATGATGACTACAATCCTGATGGTCCAGATGATGGTCCAGAGGATGTGGAGGTTGAAGAAGGTGGATCAAGTTCTGACGAATCTGAGTATGCTTCTGCTTCTGAGAAATTGGAGGATTCCCACCACGAGGATCAATACATGGGACTTCCTTCTGAAGATTCAGAGGATGATGATTATGATCCTGACGCTCCCATCCTTAGTGATAAAGCATCTGAAGAAAGTTCAAGCTCTGATTTCACATCTGACTCTGAGGATCTTGCTGCTACAATTAAGGATAACATGTCCACTGGACAAGATGGTGATGTCACATCTGCATTGTTGGGTGATGTCAAGAACTTCAAAGGTTCTAGCAGAAAAAACCATAAGAAGCCATCTATAGCTGATGAACTTTCATCTTTACAAGAGCCAGGTCAAGAGGATTTGACTCCTGTTTCTGGGAAAAGAAATGTGGAAAGGTTGGACTATCAAAAGCTGTACGAAGAGACATACCACAGTGATACTAGTGATGATGAAGATTGGGCTGCCACTGCTACTCCAAGTAGAAAAAAGAAAAACTCTGGCAAAATGACTCCAGTATCACCAAATGGAAATGCCTCAAATAATTCAAGACACACTGGTACAAATAATTCACCCACCAAAACACTTGAAGGATGTACAGAATCTGGTTCCAGGGGTAAAAAACGTGGATCTTCATACAAAAAACTTGGAGAAGTTGCTGTTCAGAGACTTTACAAATCTTTCAAAGAAAATCAGTATCCAGAACGATCCACAAAAGAAAGCTTGGCGCAAGAACTTGGACTCACTTTTCAACAGGTTGACAAATGGTTTGGCAATACTCGATGGAGCTTCCGGCATTCACCACGTGTGCAGGCTAGTCCAGGTAGTAATGCTTCACAGCAGGCCACCGACAGCGGAGCTGAAAATAAAGGAGAGAGAGGTAATGCTTCACAGCAGGCCACTGACAGCGGAGCCGAAAATAAAGGAGAGAACGAACATGAATTAGTTTCCCAGGAGACTAGTGAAGGAAAATCAAGAACCCGAAGTTCTAAGAAAAGGAAGCGTTTGTCTGAGTCGCAGACATCTGAAGCAGGGCCAGTTCATAGCGGCCCAACCCCCGATTCCTCGCCGAGAGTTGATACAGGCAATACAATGAAAAAAAGAAAGGGAAATGATACATAA 3093 0.4093 MNISTGNLASNNDCTTEKMGTEHCDLSKKAAQIDNECLDNEQKVLGAVLTDSVINEKSNEVSVSMTENSVIELPEPPRPCSENTCQTLESSCLQQSTSEQVCLSGDKSEIKCPQNVENEAGEMSDAVTPFVVVEEQTQSVPAQVNSDSVNELLDPPSGDVKENIKNVSGETSDVVTGFVEDHTESVPAQVDTDSVNELLDTLSGDITKNISSKKEPGDKTDVVTGFVEDHTEPVPAQVNTDSVNEPLDTPSGDVTKNISSKNEPGEMSDLVTGYVEDHKQSDPAQVNTDSVNEPLDTASGDVTKNISSKNEPGEMSDAITGLVEDQTQSVPAQVNTNSWKNEILDMPSGDAAKNISSDCSERKSNNPPQLREKHAYKKTSKLSKKYILRSLGSSDRTLRSRTKDNKPKDPEPINTVADVNNDETKTKERKKKKKKTRKEGFNDQFSRIRAQLRYYLNRISYEQNLIDAYSAEGWRGSSMEKLKPEKEIQRAKSEILRRKLKIRDLFQNLDSLCAEGRLPESLFDSEGEIDSEDIFCAKCQTKVLATNNDIILCDGACDRGYHQLCLDPPLLTEDIPPGDESWLCPGCDCKDDCIELVNDLLGTSLSLTDTWERVFPEAATAAGSILDHNLGLPSDDSDDDDYNPDGPDDGPEDVEVEEGGSSSDESEYASASEKLEDSHHEDQYMGLPSEDSEDDDYDPDAPILSDKASEESSSSDFTSDSEDLAATIKDNMSTGQDGDVTSALLGDVKNFKGSSRKNHKKPSIADELSSLQEPGQEDLTPVSGKRNVERLDYQKLYEETYHSDTSDDEDWAATATPSRKKKNSGKMTPVSPNGNASNNSRHTGTNNSPTKTLEGCTESGSRGKKRGSSYKKLGEVAVQRLYKSFKENQYPERSTKESLAQELGLTFQQVDKWFGNTRWSFRHSPRVQASPGSNASQQATDSGAENKGERGNASQQATDSGAENKGENEHELVSQETSEGKSRTRSSKKRKRLSESQTSEAGPVHSGPTPDSSPRVDTGNTMKKRKGNDT* 1031
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g0459 1030 MobiDBLite consensus disorder prediction 396 411 - -
Tpr1g0459 1030 SUPERFAMILY FYVE/PHD zinc finger 525 593 IPR011011 -
Tpr1g0459 1030 SMART PHD_3 535 588 IPR001965 -
Tpr1g0459 1030 MobiDBLite consensus disorder prediction 651 873 - -
Tpr1g0459 1030 MobiDBLite consensus disorder prediction 924 1030 - -
Tpr1g0459 1030 MobiDBLite consensus disorder prediction 783 816 - -
Tpr1g0459 1030 MobiDBLite consensus disorder prediction 997 1017 - -
Tpr1g0459 1030 ProSiteProfiles 'Homeobox' domain profile. 864 924 IPR001356 GO:0003677
Tpr1g0459 1030 Gene3D - 866 934 - -
Tpr1g0459 1030 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 518 598 IPR013083 -
Tpr1g0459 1030 MobiDBLite consensus disorder prediction 392 440 - -
Tpr1g0459 1030 ProSiteProfiles Zinc finger PHD-type profile. 533 590 IPR019787 -
Tpr1g0459 1030 SUPERFAMILY Homeodomain-like 863 925 IPR009057 -
Tpr1g0459 1030 Pfam PHD-finger 535 590 IPR019787 -
Tpr1g0459 1030 MobiDBLite consensus disorder prediction 351 372 - -
Tpr1g0459 1030 PANTHER POLYCOMB-LIKE TRANSCRIPTION FACTOR 332 982 - -
Tpr1g0459 1030 MobiDBLite consensus disorder prediction 963 983 - -
Tpr1g0459 1030 MobiDBLite consensus disorder prediction 924 962 - -
Tpr1g0459 1030 MobiDBLite consensus disorder prediction 707 740 - -
Tpr1g0459 1030 PANTHER HOMEOBOX PROTEIN HAT3.1 332 982 - -
Tpr1g0459 1030 CDD PHD_PRHA_like 535 587 IPR045876 -
Tpr1g0459 1030 SMART HOX_1 862 928 IPR001356 GO:0003677
Tpr1g0459 1030 MobiDBLite consensus disorder prediction 817 857 - -
Tpr1g0459 1030 Pfam Homeodomain 877 920 IPR001356 GO:0003677
Tpr1g0459 1030 CDD homeodomain 878 924 IPR001356 GO:0003677
Tpr1g0459 1030 MobiDBLite consensus disorder prediction 669 687 - -
Tpr1g0459 1030 ProSitePatterns Zinc finger PHD-type signature. 536 587 IPR019786 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g0459 Tpr-Chr1 3863498 3871595 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g0459 429 927 Homeobox Transcription Factor Family AT3G19510 47.610 7.89e-130 409
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-PHD Tpr1g0459 PHD 5.8e-10 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g0459 - - cam:101500744 1300.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g0459 1 3863498 3871595 Tpr1g0459 1 3863498 3871595 ECH