Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g0456 ATGATGATCAATGAAGATCAAACAAGTCTTACAACAACAGCCAAGGAACAACCAGGTGAAGCGATGGACAGAAATACGAACGGCGATGATGGAAGCGGAGATGACAGTCCCAAAGAGTGGTTAAACCTGAGCTTAGGAGGCACTTCAGTCTTAACAGCTGAAGAACCTGATTCACAATCAAGACCAGCCAAAGTTTTCTCCTGCAACTTTTGCATGAGAAAGTTCTTTAGTTCACAAGCATTAGGAGGTCATCAGAACGCTCACAAAAGGGAAAGAGGTGCAGCAAGAAGATATCAATCTCAGAGTCAGAGGACAATGGCACTAATGGGTTTGTCCATGAACAATATTCCAATGTTTCGATCACTTGGTGTCCAGCCTCATTCACTAGTGCACAAGCCATGCAGAGGTGGAACTATGGTGGCTCCGAGCTTTCAAGAAGCATATGCGGCAGGACTCGGAATGGCATGTACCTCTTTCACATCTGAGGATCATACTATTCCGGTTTGGCCAGGAAGCTTTCGTATGGTTCCACAGCAGCCCCAGCCACCACAAGAGTTACTCAAGCTTGATTTAGACCTCAGACTCTGA 588 0.4592 MMINEDQTSLTTTAKEQPGEAMDRNTNGDDGSGDDSPKEWLNLSLGGTSVLTAEEPDSQSRPAKVFSCNFCMRKFFSSQALGGHQNAHKRERGAARRYQSQSQRTMALMGLSMNNIPMFRSLGVQPHSLVHKPCRGGTMVAPSFQEAYAAGLGMACTSFTSEDHTIPVWPGSFRMVPQQPQPPQELLKLDLDLRL* 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g0456 195 Gene3D Classic Zinc Finger 48 114 - -
Tpr1g0456 195 MobiDBLite consensus disorder prediction 1 20 - -
Tpr1g0456 195 MobiDBLite consensus disorder prediction 1 42 - -
Tpr1g0456 195 PANTHER ZINC FINGER PROTEIN 4-LIKE 7 195 - -
Tpr1g0456 195 ProSitePatterns Zinc finger C2H2 type domain signature. 68 88 IPR013087 -
Tpr1g0456 195 SUPERFAMILY beta-beta-alpha zinc fingers 63 92 IPR036236 -
Tpr1g0456 195 PANTHER ZINC FINGER PROTEIN 4-LIKE 7 195 - -
Tpr1g0456 195 ProSiteProfiles Zinc finger C2H2 type domain profile. 66 93 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g0456 Tpr-Chr1 3847465 3848742 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g0456 32 133 C2H2 Transcription Factor Family AT5G10970 42.857 1.01e-18 79.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g0456 - - ahf:112779836 223.787
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g0456 1 3847465 3848742 Tpr1g0456 1 3847465 3848742 ECH