Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g0453 ATGGTAGCTGCGGATAGGATAAGCAATTTATCAGATGATATCCTGCACCGCATTCTCTCTTTGAACCCTACCAAAGACACCATTAGAACAGGAGTTCTTTCCAAAAGGTGGATTCATCTATGGCCCTCTATTCCTCTTCTCAACTTCACCAACATCAAATTGCCAGACATTGAATCCATTAACAGCTTCAATCACTTCTTCCACTCCGTCTTGGTTTCTCGAGACAATGCCGGTAATCATTCCATTAATACTCTCCACCTTGACATTGCATATGCTAACCTTAATCATGCTCATTCTCTTATCATTCCAAATCTCACCGCGTGGCTTAATATCGTTGTTCAACGCCAACTTAACTGTCTCGATCTTCATCTCAGTTTGATCAATGCTGCTAACCGTTTTTATCAACGTCCCAGATTGCCCGATACCGTCTTTAGTTGCAAAACGTTAGTTGTTCTAAACCTGAGTTGGTTCTTTGTAGATGGCTTTTATTTATCTTCTAGTGGATTTGGATTTGTCTCACTCAAAACCCTTCGTTTAAAAAATATTAATTTTCATGATGATGAAGTTTTCATGTTGCTTCTTGCTGGTTGTCCGGTTCTTGAGGATTTAAAGGTATGCAATATAGTCTTCTTGTCGGAGAAGCATGACCGTCCAGTTGCTGAAAGGTTATATTTAAGCAAGTTGATTAGAGCAGATATTACTGACTGTCCGTGTATTTTTCCGGTTAAAGCACTCTCTAATTCGGAGTTTATGCGATTTCAAATAAGGTTGGATATTCTTACTATTCATGATGGACTTCCTGTCTTTCATAATTTGACTCACTTGGTGATCAACAATATTTCGGATTTGGTACTATTGTTTATCCGCCACTGCCATAATCTTCAAAATCTTGTCATTTATCAGAAGACACAAACTGAGTGGGATACAGACGTTGAAGACGAAGAAGAAAGTTGGGGGTTCCCAAATTTCATTCCACAATGCTTTTCATATCTTCGAACTTGTACTATTCGTGACTTTGCATATTTTGACCTAGATCATGACATTATGTTTGCAAGATATATTCTAAATAACACAGGAGTTTTAGAAACCATGACAATATCAATATGGGGTGACGAGGAACAACATGAAATAGAAATGGAATTATCCTCATATCCAAGGGCCTCCGCAACATGTCAACTTCAGTTTATTGATAACAAATATGATATGAAGAGGTTTGAACCTTTCTTTGGGATCAATGCTATTGCTAATGTCTGCCCTGTTGATTTCTCCAAAATTGCTATTGCTCTACCCTTTGAAGAAATGCAAGCAGTTAGGTTTATGACTGGTTTCTCTTTGTCAACTTTTGTTTCTTGCCAATATTGGATGTGTACTACGTTTAATAGTAAGATTACTGAACTTGTTAATGGAACTGCTTCTTGTTGGGGTAATATGGGTGGTAAGGTTAATATTGGAGTTGTTAATGGGACTGCAACTGCTGATTTTTAG 1485 0.3771 MVAADRISNLSDDILHRILSLNPTKDTIRTGVLSKRWIHLWPSIPLLNFTNIKLPDIESINSFNHFFHSVLVSRDNAGNHSINTLHLDIAYANLNHAHSLIIPNLTAWLNIVVQRQLNCLDLHLSLINAANRFYQRPRLPDTVFSCKTLVVLNLSWFFVDGFYLSSSGFGFVSLKTLRLKNINFHDDEVFMLLLAGCPVLEDLKVCNIVFLSEKHDRPVAERLYLSKLIRADITDCPCIFPVKALSNSEFMRFQIRLDILTIHDGLPVFHNLTHLVINNISDLVLLFIRHCHNLQNLVIYQKTQTEWDTDVEDEEESWGFPNFIPQCFSYLRTCTIRDFAYFDLDHDIMFARYILNNTGVLETMTISIWGDEEQHEIEMELSSYPRASATCQLQFIDNKYDMKRFEPFFGINAIANVCPVDFSKIAIALPFEEMQAVRFMTGFSLSTFVSCQYWMCTTFNSKITELVNGTASCWGNMGGKVNIGVVNGTATADF* 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g0453 494 SUPERFAMILY RNI-like 108 300 - -
Tpr1g0453 494 Pfam Leucine Rich Repeat 173 198 IPR013101 -
Tpr1g0453 494 SMART 9598neu4hmm 329 396 IPR006566 -
Tpr1g0453 494 Pfam FBD 323 366 IPR006566 -
Tpr1g0453 494 PANTHER F-BOX/RNI SUPERFAMILY PROTEIN-RELATED 259 394 - -
Tpr1g0453 494 PANTHER F-BOX/RNI SUPERFAMILY PROTEIN-RELATED 5 210 - -
Tpr1g0453 494 SUPERFAMILY F-box domain 4 54 IPR036047 GO:0005515
Tpr1g0453 494 Gene3D Ribonuclease Inhibitor 5 367 IPR032675 -
Tpr1g0453 494 PANTHER F-BOX/RNI SUPERFAMILY PROTEIN-RELATED 5 210 - -
Tpr1g0453 494 PANTHER F-BOX/RNI SUPERFAMILY PROTEIN-RELATED 259 394 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g0453 Tpr-Chr1 3817485 3820412 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g0453 437 482 Inorganic Solute Cotransporters AT1G08090 71.739 4.69e-15 75.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g0453 - - mtr:MTR_1g107385 407.912