Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g0412 ATGGCAATCCATCATCATCATCATCACAATCAACTCAATCAAAACGTTTCATCTCTTCTTCTAGATACTCTTTACTGTGATGAAGAAAAATGGGAAGAAGAACAAGAACATCATGAAGATGATTTATCATCTGAACAAAGTGATGTTACAACAAACAATGATATCTTTGATTCTACTTCCCTTTTTCCTCTGCTTTTCTTAGAACAAGATTTGTTCTGTCAAGATGAAGAACTTAACACTCTTTTCATCAAAGAAAAAACTCATTATGAAGATCTGAATTTTGATGACTCACTCTCTCAACCACGTCGTGAAGCTGTTGAATGGATCCTTAAAGTCAATGCCCATTATGGTTTCTCTTCTCTCACTGCAACACTTGCTGTTACTTACTTTGACAAATTCATTTTAACCTTCCATTTTCAAAAAGATAAACCATGGATGCTTCAGCTTGTTGCTGTTACTTGCATCTCTTTAGCTGCTAAAGTTGAAGAAACACAAGTTCCTCTTCTCTTAGACCTTCAAGTGCAAGATACCAAATATGTGTTTGAGGCAAAAACTATTCAAAGAATGGAACTTTTGATTCTTTCAACACTGAAATGGAAGATGCATCCTGTAACACCACACTCATTTCTAGATCACATTATAAGAAGGCTTGGTTTGAAAACTAATCTTCATTGGGAGTTTCTTAGGCGTTGTGAGAATCTTCTTCTATCACTACTTTTAGATTCAAGATTTGTTGGTTGTGTTCCTTCTGTGTTGGCCACTGCTACAATGCTGCATGTTATAGACCAGATTGAACAGAGTGATGATGGTGTGGAGGACTACAAAAATCAGCTTCTTAATGTTCTCAAAATCAGTAAGGAGAAAGTAGATGAATGTTATAATATGATTCTGCAAGTAACAAATGCAAATTCTAATGATGATTATTATGGTAATAAACGAAAGTATGAACAAATCCCTGGTAGTCCAAGTGGCGTAATTGATGCTGTATTTAGTTCTGATGGTTCCAACGATTCATGGACAGTGGGGTCATCAACATATTCAACATCAGAACCTGTGTTTAAGAAGACCAAAACTCAAGGACAAAATGTTAATTTGTCACCTCTTAACAGGGTTATTGTCGGAATTCTTGCCACTGCAACCTCTCCTTAA 1149 0.3577 MAIHHHHHHNQLNQNVSSLLLDTLYCDEEKWEEEQEHHEDDLSSEQSDVTTNNDIFDSTSLFPLLFLEQDLFCQDEELNTLFIKEKTHYEDLNFDDSLSQPRREAVEWILKVNAHYGFSSLTATLAVTYFDKFILTFHFQKDKPWMLQLVAVTCISLAAKVEETQVPLLLDLQVQDTKYVFEAKTIQRMELLILSTLKWKMHPVTPHSFLDHIIRRLGLKTNLHWEFLRRCENLLLSLLLDSRFVGCVPSVLATATMLHVIDQIEQSDDGVEDYKNQLLNVLKISKEKVDECYNMILQVTNANSNDDYYGNKRKYEQIPGSPSGVIDAVFSSDGSNDSWTVGSSTYSTSEPVFKKTKTQGQNVNLSPLNRVIVGILATATSP* 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g0412 382 CDD CYCLIN 102 194 IPR013763 -
Tpr1g0412 382 Gene3D - 203 295 - -
Tpr1g0412 382 Pfam Cyclin, N-terminal domain 99 201 IPR006671 -
Tpr1g0412 382 PANTHER CYCLIN-D3-1 42 350 - -
Tpr1g0412 382 SUPERFAMILY Cyclin-like 205 317 IPR036915 -
Tpr1g0412 382 SMART Cyclin_C_2 204 324 IPR004367 -
Tpr1g0412 382 Gene3D - 96 202 - -
Tpr1g0412 382 PANTHER CYCLINS 42 350 IPR039361 -
Tpr1g0412 382 SUPERFAMILY Cyclin-like 72 202 IPR036915 -
Tpr1g0412 382 Pfam Cyclin, C-terminal domain 204 317 IPR004367 -
Tpr1g0412 382 ProSitePatterns Cyclins signature. 102 133 IPR006671 -
Tpr1g0412 382 SMART cyclin_7 107 195 IPR013763 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g0412 Tpr-Chr1 3521380 3523990 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g0412 1 299 Core Cell Cycle Gene Families AT4G34160 57.525 2.47e-111 328
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g0412 K14505 - gmx:547740 502.671
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g0412 1 3521380 3523990 Tpr1g0412 1 3521380 3523990 ECH