Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g0411 ATGGATCCAGCGCCCGGTGATGCGTCAAATCCACCTCCTCTGAAAATACCATCTACGGCACCTCTTGCTAAAGAGGATGATGGCCAAGATTCTGCTGCTGTAGCCTCTGGACAAGATAATACTGCCCGTGAAGCACCATCTAGGCTATCTCCTACCGGCATATCTTCGTGGGCCAAAAATTTAAATATTTCTAAGTCATTTTCTGGTAACCAAGATGACTCTTCAAGTGAAAATGTTGCAAAATCAACGTTTGCACGGTTTACAAGTAATCTGGGATTGCGGTTGTCTCCAAAATCTCCTGTGGTAGATGACAATTCCAATGAACCGGCAGCACAATCTAATTTGTTTGGAAGTATCACAAAAGGTCTTGTAGACTCTTCGAAGAATGCGGTGAAAGCTGTGCAGGTCAAAGCGCGGCACGTTGTTTCTCAAAACAAACGCAGATACCAGGAGGGAGGTTTTGATTTAGATATGACATATATCACAGAAAACATTATTGCAATGGGGTTCCCTGCTGGTGACATGAGCTCTGGGTTTTTTGGTTATGTTGAAGGATTTTACAGAAATCACATGGAAGAAGTGATCAAGTTTTTTGAGACTCACCACAAGGATAAATACAAAGTATATAATCTTTGTTTGGAGCGCCTGTATGATGCATCATTGTTCGAGGGGAAGGTTGCTAGCTTCCCATTTGATGACCATAATTGCCCACCGCTTCAATTGGTTATATCATTTTGTCAAAGTGCTTACTCATGGTTGAAACAAGACATTGAGAATGTGGTAGTTGTCCACTGTAAGGCTGGGATGGCCAGGACAGGGTTGATGATTTCTAGTCTCCTACTATTCTTAAAGTTCTTCCCGACCGCTGAGGAGTCCATGGATTACTATAATCAGAAAAGATGTGTTGATGGAAAAGGACTTGTTCTGCCTAGTCAGATTAGGTATGTCAAGTATTTTGAACGGGTCTTGACTTACTTTAATGGCGAATGCCCACCTCCCCGCAGGTGCATGCTTAGGGGATTCCGGCTTCACAGATGTCCTTATTGGATCAGGCCATCTATAACCATCTCAGATCATAGTGGTGTGTTGTTCTCAACCAAAAAGCATCCAAGAACCAAGGATCTTTTGCCAGAAGATTTTTGGTTTACTGCACCAAAAAAGGGAGTGATGGTCTTTGCTTTGCCTGGAGAGCCTGGTCTCACAGAGTTGGCTGGGGACTTCAAAATCCATTTTCATGATCGCCAAGGAGATTTTTACTGTTGGTTGAACACAACCATGACAGAAAACAGAAAAGTTTTGAACACCGGTGATCTTGATGGCTTTGACAAGAGAAAATTGCCTTCTCCAGGATTCCAGGTTGAGGTTGTGCTGGTGGATCATAATGGTAATGTTGTAGCTTCCAAACCTGAAATTACAAAGAAATCTGATGAGAGTTCAAGTACCAATCCCGCCCCAGTTGAGGCGAGCAACCCCACACCAAATGCAAACAAAGAATCATCAGGGGATGGAGATCAGGACAAGGACGACGTATTTTCAGATGGTGAGGCAGAGCATCCTGCTTCTTCAAGAAGCAAGCAAACAAAGGCACCTTCTGAATCAGTTGAAACAGTTGCAAGTGCCACCAAAGAATCTGAGGCAAACAAAATTTCAAATCAAATCACAAATATAACACATGCAACAGAACAAGTTTCTTTGGGTAGTAAGATCTCTACACCAAGTCAAAGTACTGGTGAGCCAAAAAGTGATGTTGGTGGAAGAACAGTGTCCAGTCTCGACGGACCTAGCTCAGAAAGTGAGTTTAAGGCCATGGCTGCAGATGCTTCTGTTTTTACGTTCGGAGATGATGAAGACTATGAAAGTGATTGA 1866 0.4303 MDPAPGDASNPPPLKIPSTAPLAKEDDGQDSAAVASGQDNTAREAPSRLSPTGISSWAKNLNISKSFSGNQDDSSSENVAKSTFARFTSNLGLRLSPKSPVVDDNSNEPAAQSNLFGSITKGLVDSSKNAVKAVQVKARHVVSQNKRRYQEGGFDLDMTYITENIIAMGFPAGDMSSGFFGYVEGFYRNHMEEVIKFFETHHKDKYKVYNLCLERLYDASLFEGKVASFPFDDHNCPPLQLVISFCQSAYSWLKQDIENVVVVHCKAGMARTGLMISSLLLFLKFFPTAEESMDYYNQKRCVDGKGLVLPSQIRYVKYFERVLTYFNGECPPPRRCMLRGFRLHRCPYWIRPSITISDHSGVLFSTKKHPRTKDLLPEDFWFTAPKKGVMVFALPGEPGLTELAGDFKIHFHDRQGDFYCWLNTTMTENRKVLNTGDLDGFDKRKLPSPGFQVEVVLVDHNGNVVASKPEITKKSDESSSTNPAPVEASNPTPNANKESSGDGDQDKDDVFSDGEAEHPASSRSKQTKAPSESVETVASATKESEANKISNQITNITHATEQVSLGSKISTPSQSTGEPKSDVGGRTVSSLDGPSSESEFKAMAADASVFTFGDDEDYESD* 622
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g0411 621 MobiDBLite consensus disorder prediction 500 522 - -
Tpr1g0411 621 MobiDBLite consensus disorder prediction 523 596 - -
Tpr1g0411 621 ProSiteProfiles Phosphatase tensin-type domain profile. 147 326 IPR029023 -
Tpr1g0411 621 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 160 328 IPR029021 -
Tpr1g0411 621 PANTHER PHOSPHATASE WITH HOMOLOGY TO TENSIN 23 621 - -
Tpr1g0411 621 MobiDBLite consensus disorder prediction 476 499 - -
Tpr1g0411 621 MobiDBLite consensus disorder prediction 1 18 - -
Tpr1g0411 621 MobiDBLite consensus disorder prediction 467 598 - -
Tpr1g0411 621 PANTHER PHOSPHATIDYLINOSITOL 3,4,5-TRISPHOSPHATE 3-PHOSPHATASE AND PROTEIN-TYROSINE-PHOSPHATASE PTEN2A 23 621 - -
Tpr1g0411 621 Gene3D Protein tyrosine phosphatase superfamily 132 329 IPR029021 -
Tpr1g0411 621 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 261 300 IPR000387 GO:0016311|GO:0016791
Tpr1g0411 621 MobiDBLite consensus disorder prediction 33 53 - -
Tpr1g0411 621 MobiDBLite consensus disorder prediction 1 53 - -
Tpr1g0411 621 ProSitePatterns Tyrosine specific protein phosphatases active site. 263 273 IPR016130 GO:0016311|GO:0016791
Tpr1g0411 621 ProSiteProfiles C2 tensin-type domain profile. 333 460 IPR014020 -
Tpr1g0411 621 CDD PTP_PTEN 157 321 IPR045101 GO:0016791
Tpr1g0411 621 SMART PTEN_C2_2 331 459 IPR014020 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g0411 Tpr-Chr1 3510654 3516708 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g0411 33 621 Protein tyrosine phosphatase (PTP) family AT3G19420 68.667 0.0 833
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g0411 K01110 - gmx:100784003 1055.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g0411 1 3510654 3516708 Tpr1g0411 1 3510654 3516708 ECH
Tpr2g5734 2 66542749 66550080 Tpr1g0411 1 3510654 3516708 PCT