Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g0407 ATGGCAAAGTCGAAGAATCACACCGCTCACAACCAATCTTACAAAGCTCACAAGAATGGCATCAAAAAGCCAAAGAGGCATCGCCACACTTCAACCAAAGGGATGGATCCTAAGTTTTTGAGGAATCAGAGGTATGCAAGGAAGCACAACAAGAAAAATGGTGAAATTTCCGCTGAAGAATAG 183 0.4262 MAKSKNHTAHNQSYKAHKNGIKKPKRHRHTSTKGMDPKFLRNQRYARKHNKKNGEISAEE* 61
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g0407 60 MobiDBLite consensus disorder prediction 1 32 - -
Tpr1g0407 60 PANTHER 60S RIBOSOMAL PROTEIN L29 1 60 - -
Tpr1g0407 60 MobiDBLite consensus disorder prediction 1 60 - -
Tpr1g0407 60 Pfam Ribosomal L29e protein family 3 42 IPR002673 GO:0003735|GO:0005840|GO:0006412
Tpr1g0407 60 Gene3D - 1 60 - -
Tpr1g0407 60 PANTHER 60S RIBOSOMAL PROTEIN L29 1 60 IPR002673 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g0407 Tpr-Chr1 3485850 3486491 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g0407 1 60 Cytoplasmic Ribosomal Protein Gene Family AT3G06700 86.885 5.80e-32 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g0407 K02905 - gmx:100499874 125.176