Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g0406 ATGGCAACTCTCTCTGAAACCTACGCATGTGCACCTTCCACCGAACGCGGCCGTGGCATTCTCATCTCCGGCGATCCCAAAACCAATAACATTCTCTATTGCACCTCACGATCCGTCATCATTCGTAATCTCGACAATCCATTACAAGTTTCCGTTTATGGCGAACATTCTTACCCTGTAACCGTCGCCCGTTATTCCCCTAACGGTGAATGGATCGCGTCCGCGGATGTCTCCGGTACCATCCGCATTTGGGGAACTCACAATGATTATGTTCTTAAGAATGAGTTTCGTGTTCTCTCTGGTCGGATCGATGATCTTCAATGGTCTGCTGATTGCCAGAGGATTGTTGCTTGTGGAGATGGAAAGGGAAAATCATTTGTTCGCGCCTTCATGTGGGATTCGGGTTCCACTGTTGGTGATTTTGATGGCCATTCGCGGCGGGTTCTAAGTTGTGCATTCAAACCAACAAGACCATTCCGCATTGTCACTTGTGGAGAAGATTTTTTGGCAAACTTTTATGAAGGTCCACCATTCAAGTTCAGTATGTCCATTAGGGACCATACGAATTTCATCAATTGTGTTAGATATTCTCCAGATGGGAACAAATTTATTACAGTCAGCTCAGATAGAAAGGGTATTATATATGACGGAAAGACTGGGAATAAACTCGGAGAATTTTCTGAAGAGGATGGTCACAAGGGCAGCATATATGCTGTTAGTTGGAGTCCTGACAGTAAACAGGTTCTTACTGTGTCTGCTGACAAGTCTGCAAAAGTATGGAATATTGATGAGAATGGTAGTGGAACAGTACATAAGACATTGACATATACTGAATCTGGTGGGGTGGAGGACATGCTCGTCGGTTGTCTTTGGCAGAATGACCATCTGCTTACTATCTCCCTTGGCGGAACGATTAATTTATACTCTGCTAAGGATCTAGATCAGAGCCCAAAGTCCTTATCTGGTCACATGAAGAATGTAACTGTTTTGAATCTACTCAACAAAAGTGATAAGATGCTTTTGTCCAGCAGCTATGATGGAGTGATCATTAGATGGATTCCAGGTATTGGTTACAGCGGTAAGTTTGACGGTAAACAATTTGGATTAATCAATTTATTAGAAGCTGCCGAAGAAGAAGTTGTTACTGCTGGATTTGACAACAAGGTATACAGAGTTCCCCTTCATGGGGATAACTTTGGTCCTGCTGAGCATGTTGATGTTGGGAGCCAGCCTAAGCATGTGGCGCTTGCACTTAATTCCCCTCAATTTGCTCTTATTGCAATTGAATCCGGGGTTGTCTTACTTAACGGTGCAAAAATTGTGGCCACTGTAAACCTTGGCTTTGTTGTGACCGCATGTACTATTTCACCTGATGGCAGTGAAGCAATTGTAGGTGGACAGGATGGTAAGCTCCGTATTTATTCTATCTCAGGAGATACACTTACTGAACAGACTGTTCTTGAGAAGCACCGCGGTGCAATCAGCGCAATCAAATATTCTCCAGATGTTTCCATGTTTGCATCAGCTGATCTAAATCGCGAAGCTGTTGTGTGGAACTGTGCTTCTAGAGAGGTGGTGCTTAATAACATGTTATTTCACACTGCACGTATAAACTGCATTTCTTGGTCACCTGATAGCAAACTGATAGCTACTGGTTCACTTGATACATGTGTCATTGTATATGAAATTGGAAAGCCAGCTGCAAGCCGCAGAACCATAAAAGGTGCTCATTTAGGTGGAGTCTATGGATTGACTTTTATTGGGCCAGAAACAGTGGTCAGTTCAGGAGAAGATAGTTGCATTCGTGTTTGGAATTTGATTGCAGAATAA 1830 0.4328 MATLSETYACAPSTERGRGILISGDPKTNNILYCTSRSVIIRNLDNPLQVSVYGEHSYPVTVARYSPNGEWIASADVSGTIRIWGTHNDYVLKNEFRVLSGRIDDLQWSADCQRIVACGDGKGKSFVRAFMWDSGSTVGDFDGHSRRVLSCAFKPTRPFRIVTCGEDFLANFYEGPPFKFSMSIRDHTNFINCVRYSPDGNKFITVSSDRKGIIYDGKTGNKLGEFSEEDGHKGSIYAVSWSPDSKQVLTVSADKSAKVWNIDENGSGTVHKTLTYTESGGVEDMLVGCLWQNDHLLTISLGGTINLYSAKDLDQSPKSLSGHMKNVTVLNLLNKSDKMLLSSSYDGVIIRWIPGIGYSGKFDGKQFGLINLLEAAEEEVVTAGFDNKVYRVPLHGDNFGPAEHVDVGSQPKHVALALNSPQFALIAIESGVVLLNGAKIVATVNLGFVVTACTISPDGSEAIVGGQDGKLRIYSISGDTLTEQTVLEKHRGAISAIKYSPDVSMFASADLNREAVVWNCASREVVLNNMLFHTARINCISWSPDSKLIATGSLDTCVIVYEIGKPAASRRTIKGAHLGGVYGLTFIGPETVVSSGEDSCIRVWNLIAE* 610
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g0406 609 ProSiteProfiles Trp-Asp (WD) repeats profile. 229 263 IPR001680 GO:0005515
Tpr1g0406 609 SUPERFAMILY WD40 repeat-like 22 172 IPR036322 GO:0005515
Tpr1g0406 609 ProSiteProfiles Trp-Asp (WD) repeats profile. 574 609 IPR001680 GO:0005515
Tpr1g0406 609 CDD WD40 56 352 - -
Tpr1g0406 609 ProSiteProfiles Trp-Asp (WD) repeats profile. 53 94 IPR001680 GO:0005515
Tpr1g0406 609 ProSiteProfiles Trp-Asp (WD) repeats profile. 184 225 IPR001680 GO:0005515
Tpr1g0406 609 ProSitePatterns Trp-Asp (WD) repeats signature. 248 262 IPR019775 -
Tpr1g0406 609 SMART WD40_4 313 353 IPR001680 GO:0005515
Tpr1g0406 609 SMART WD40_4 134 174 IPR001680 GO:0005515
Tpr1g0406 609 SMART WD40_4 566 605 IPR001680 GO:0005515
Tpr1g0406 609 SMART WD40_4 219 261 IPR001680 GO:0005515
Tpr1g0406 609 SMART WD40_4 437 475 IPR001680 GO:0005515
Tpr1g0406 609 SMART WD40_4 46 85 IPR001680 GO:0005515
Tpr1g0406 609 SMART WD40_4 523 562 IPR001680 GO:0005515
Tpr1g0406 609 SMART WD40_4 177 216 IPR001680 GO:0005515
Tpr1g0406 609 SMART WD40_4 480 519 IPR001680 GO:0005515
Tpr1g0406 609 SMART WD40_4 89 133 IPR001680 GO:0005515
Tpr1g0406 609 SMART WD40_4 267 309 IPR001680 GO:0005515
Tpr1g0406 609 Gene3D - 11 339 IPR015943 GO:0005515
Tpr1g0406 609 Pfam WD domain, G-beta repeat 533 561 IPR001680 GO:0005515
Tpr1g0406 609 Pfam WD domain, G-beta repeat 50 84 IPR001680 GO:0005515
Tpr1g0406 609 Pfam WD domain, G-beta repeat 221 261 IPR001680 GO:0005515
Tpr1g0406 609 Pfam WD domain, G-beta repeat 182 211 IPR001680 GO:0005515
Tpr1g0406 609 ProSitePatterns Trp-Asp (WD) repeats signature. 592 606 IPR019775 -
Tpr1g0406 609 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 574 609 - -
Tpr1g0406 609 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 530 563 - -
Tpr1g0406 609 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 53 84 - -
Tpr1g0406 609 SUPERFAMILY WD40 repeat-like 139 606 IPR036322 GO:0005515
Tpr1g0406 609 PANTHER WD-REPEATCONTAINING PROTEIN WDR1 1 609 - -
Tpr1g0406 609 ProSiteProfiles Trp-Asp (WD) repeats profile. 530 563 IPR001680 GO:0005515
Tpr1g0406 609 Gene3D - 7 605 IPR015943 GO:0005515
Tpr1g0406 609 ProSiteProfiles Trp-Asp (WD) repeats profile. 487 528 IPR001680 GO:0005515
Tpr1g0406 609 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 229 263 - -
Tpr1g0406 609 PANTHER TRANSCRIPTION FACTOR WD40-LIKE FAMILY-RELATED 1 609 - -
Tpr1g0406 609 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 487 519 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g0406 Tpr-Chr1 3479278 3483923 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g0406 184 508 Eukaryotic Initiation Factors Gene Family AT2G46290 23.410 2.76e-08 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g0406 K24736 - gmx:100798693 1073.54