Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g0400 ATGGTGAGTATTGAATCTCATTCAACTATCATCCCCTCTAAACAAACCCCTAATCCAAAACTCTACTCAATATGTGAACAAATCAAGCTTCGTACTCATGCTCCTCTCCTTTATGTCTACAAACCACATAATCACAACAACAATTCAACCTTCCTTGAAATACTTCAAAACTCTCTTAGCCAAGCTTTGGTTATTTACTATCCACTAGCTGGAAGGTTGAGTTGGATCAAAGATGGAAGATGGGAAATTCATTGCAATGCCAAAGGAGCACTTTTTTTAGAAGCCAAATGTGAAGAATTAACCGGTTTGAATCAATTGGGTGATTTTGTACCAACTAATTTGGTGTCACAACTCATACCAAACATTGATTACAATCTTCCTCTTGAAGATATTCCCTTATTGGCTGTGCAACTAACGAGGTTTCGATGTGGCGGTTTTACATTAGGCGTTGCTTTATGTCGAGCCGCCACTGATGGAACTGCAACCATGCATTTTATGAATGCATGGGCTAAGCTTGCGCGTGGGGAGACTTTGGACCCAAATGAATTTCCGTGTCATGATCGTACCTTGTTAAATTCGCGTAAACTAACACAATTTTCGTCCTTGCGTTGGCAGCACCGTGAATTTGACGCGCCTCCTATTTGGGTGGGTAGTGATTTAAATGGCAATAGAGAAGTGAGTGTTGCGATTGTGAAACTCACAAGAGAACATGTTTCGAAGCTCAAGAAAAAAGCTAGTTCTCGCATGAGTTTTCAATCCACCTCCAAAGATGTCGATAGGACAAAACCTTATTCAACTTTTGAGGTTATTGCAGGACATCTTTGGAAGAGTGTTACCAAAGCACGCTACATAGGAAATAATGATCAACAAACGAGGTTGTCCACGCTGGTTAATTGTAGAAATCGTTTACAACCGCCGCTTCCTAATGGTTATGTTGGTAATGCAGCATTTCCAACTGTGACACCAACTCGTTCCTTCAATGATCTTATTTGCAAACCTTTGGGTGATGCAGTTGAGGATGTTAAGAAAGCAGTTGAAAGGGTGACAGGGGAATATGCAACGTCCGCACTTAATTACATAGATAACGAGAAGAACATGGATTTGTTGAGGTATAATTTTCACTATCCGGCAAAGAGTGTGTGTAAGGGACAATATAAGGGGAACCCAAATCTTTTTGTTGTAAGTTGGATGAATTTTTCGTATAAGGATGCAAATTTTGGACTGGGAGGAGAACCTATTTATTTTGGACCAGGATTTATGGATTCAGAAGGAAAAGCATTAATTATGAATAATAATAATGGTGATGGTATTGTGGTGGCTATTTCTTTAGAGCCATCTTGTATGGATAGTTTTAAGAATTTTTTTTATGATGACATTAGAGAGATGTTTTGTAATTCTAAATTGTAG 1407 0.3888 MVSIESHSTIIPSKQTPNPKLYSICEQIKLRTHAPLLYVYKPHNHNNNSTFLEILQNSLSQALVIYYPLAGRLSWIKDGRWEIHCNAKGALFLEAKCEELTGLNQLGDFVPTNLVSQLIPNIDYNLPLEDIPLLAVQLTRFRCGGFTLGVALCRAATDGTATMHFMNAWAKLARGETLDPNEFPCHDRTLLNSRKLTQFSSLRWQHREFDAPPIWVGSDLNGNREVSVAIVKLTREHVSKLKKKASSRMSFQSTSKDVDRTKPYSTFEVIAGHLWKSVTKARYIGNNDQQTRLSTLVNCRNRLQPPLPNGYVGNAAFPTVTPTRSFNDLICKPLGDAVEDVKKAVERVTGEYATSALNYIDNEKNMDLLRYNFHYPAKSVCKGQYKGNPNLFVVSWMNFSYKDANFGLGGEPIYFGPGFMDSEGKALIMNNNNGDGIVVAISLEPSCMDSFKNFFYDDIREMFCNSKL* 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g0400 468 PANTHER TRICHOTHECENE 3-O-ACETYLTRANSFERASE 4 464 - -
Tpr1g0400 468 Pfam Transferase family 1 456 - -
Tpr1g0400 468 Gene3D - 218 458 IPR023213 -
Tpr1g0400 468 Gene3D - 1 211 IPR023213 -
Tpr1g0400 468 PANTHER SHIKIMATE O-HYDROXYCINNAMOYLTRANSFERASE-RELATED 4 464 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g0400 Tpr-Chr1 3438535 3440110 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g0400 2 457 Monolignol Biosynthesis Gene Families AT5G48930 36.069 5.62e-85 266
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g0400 K13065 - gmx:100775549 592.423