Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g0386 ATGTCGAGCGAAAGGAAAGGCAAAGGTCGCCAAAGGATTCAGATGAAAAAGATGAGCAACGAGAGCCACCTGCAAGTAACTTTCTCAAAGCGTCGCAGCGGGCTCTTCAAGAAAGCTAGTGAGCTTTGTACCCTTTGTGGTGTAGATGTTGCACTCATTGTATTCTCACCTAGTGGGAAGGCATTTTCCTTTGGTCACCCTAATATTGATACGGTCATAGATCGCTATCTCTCTCGGGTCCCACTTCAACCCACCACCACCATGCAATTCATTGAGGCTCACCGCAACGCCAACTTGTGTGAGCTCAATGCTCAATTAACTGAAATCAACAACATGTTGGACAATGAGAAGAAACGCAGTGATGAGCTGAGCCTTTTGCGCAAGGTGACTGAGGCTCAATTTTGGTGGGCTTGTCCAATTGATGGGATGAATAGGGCTGAACTTGAATTCCTCAAGATGGCTTTGTTGGAGCTTAAGAAACTTGTTGCACAACATGTTAATGAGCTTGCAATTCAGGGTGCTCCTACTCAAACGCTTCCACTTTTTGTTGGAAATGCTTCATCCTCTAACATCCCTCTCTATCACCAGTCAAATCCTCAACATGCTCAAGTGTTTTCACCACAAGTTTTTCAGAACCCTATGTTGGAGCCTCATTTATTTGGCTTCAACAATATGGGAGGAGGAGGAAGATATGGACCACCACCACCTAGTTTCTTTTGA 720 0.45 MSSERKGKGRQRIQMKKMSNESHLQVTFSKRRSGLFKKASELCTLCGVDVALIVFSPSGKAFSFGHPNIDTVIDRYLSRVPLQPTTTMQFIEAHRNANLCELNAQLTEINNMLDNEKKRSDELSLLRKVTEAQFWWACPIDGMNRAELEFLKMALLELKKLVAQHVNELAIQGAPTQTLPLFVGNASSSNIPLYHQSNPQHAQVFSPQVFQNPMLEPHLFGFNNMGGGGRYGPPPPSFF* 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g0386 239 Gene3D - 88 177 - -
Tpr1g0386 239 Gene3D - 20 87 IPR036879 GO:0003677|GO:0046983
Tpr1g0386 239 ProSiteProfiles MADS-box domain profile. 8 68 IPR002100 GO:0003677|GO:0046983
Tpr1g0386 239 SUPERFAMILY SRF-like 9 88 IPR036879 GO:0003677|GO:0046983
Tpr1g0386 239 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 17 64 IPR002100 GO:0003677|GO:0046983
Tpr1g0386 239 PRINTS MADS domain signature 10 30 IPR002100 GO:0003677|GO:0046983
Tpr1g0386 239 PRINTS MADS domain signature 30 45 IPR002100 GO:0003677|GO:0046983
Tpr1g0386 239 PRINTS MADS domain signature 45 66 IPR002100 GO:0003677|GO:0046983
Tpr1g0386 239 MobiDBLite consensus disorder prediction 1 22 - -
Tpr1g0386 239 CDD MADS_MEF2_like 9 77 IPR033896 GO:0000977|GO:0045944
Tpr1g0386 239 MobiDBLite consensus disorder prediction 1 17 - -
Tpr1g0386 239 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL62 7 183 - -
Tpr1g0386 239 SMART madsneu2 8 67 IPR002100 GO:0003677|GO:0046983
Tpr1g0386 239 PANTHER MADS BOX PROTEIN 7 183 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g0386 Tpr-Chr1 3327004 3327723 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g0386 5 223 Type I MADS-box Gene Family AT5G60440 45.045 2.28e-55 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Tpr1g0386 SRF-TF 1e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g0386 - - mtr:MTR_1g105905 280.796
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g0386 1 3327004 3327723 Tpr1g0386 1 3327004 3327723 ECH