Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g0353 ATGGGTTTGCAAAATCAGCTGAACGACGTGTCGTCTGATTCAATTCCGTTACTAGTTCTGATGCACATAGCCACCTGCGTCAATTACATCCGTTCGATGCTTCTAACTTTCTTCCAATCCATCGGTCTCTCATGTCTCCAAACCGATCAGATCGTCGACGACCACTTCTTAGCCGCTGTTGGATCAGGACTCGCCGGACTCATCATGCTCTCCGATCAACTCACTCTCAACAACCAATTCTTCTACACATACCAAGATGCCGCTTCACCAGATAACCACCGCTGCGTCTTTTGCCAATCCAATTTCCAAAACGGCGATCATGTTCGGAAGCTTCCTTGCCGTCACGTCTTCCACCGTCACTGTCTCAACGGTTGGTTCCATCGGTACAACTTCAATTGTCCTTTATGCCGTTCATCGCTTATCTCCGATGAGCGCGTGGCTCTCACTGAACGCCGTGTCGGTCGCCAACTCATCTCATGGTTCACACTTCGCTGA 495 0.497 MGLQNQLNDVSSDSIPLLVLMHIATCVNYIRSMLLTFFQSIGLSCLQTDQIVDDHFLAAVGSGLAGLIMLSDQLTLNNQFFYTYQDAASPDNHRCVFCQSNFQNGDHVRKLPCRHVFHRHCLNGWFHRYNFNCPLCRSSLISDERVALTERRVGRQLISWFTLR* 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g0353 164 SUPERFAMILY RING/U-box 75 143 - -
Tpr1g0353 164 Pfam Ring finger domain 94 137 IPR001841 -
Tpr1g0353 164 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 69 142 IPR013083 -
Tpr1g0353 164 ProSiteProfiles Zinc finger RING-type profile. 95 137 IPR001841 -
Tpr1g0353 164 PANTHER RING ZINC FINGER PROTEIN-RELATED 1 162 - -
Tpr1g0353 164 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHA2A 1 162 - -
Tpr1g0353 164 SMART ring_2 95 136 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g0353 Tpr-Chr1 3103844 3104835 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g0353 1 163 C3H Transcription Factor Family AT1G15100 49.693 8.18e-48 150
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g0353 K16282 - gmx:100803789 242.276