Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g0352 ATGCATAACAAGGACGTTTGTTCTCCGTCATCCAAAAGTGGATTCGGCATCGGCATCAACACCGCCGGCCGCATGCAGTCGAACGCCGGCGCGTTTGCTTCGTTGTACTCTGCTCTGACTAATGAAAATCTTCCATCGCTCGCCGGAAACTGCAGCAACGGCGGCGGCGTTTCGCTTTATCAGTACTCTGACTCTGGAACAGAGTACGACTCGTGCATGATACAGAAGCATCAGGATATGGTGAATCGTCACAGCATGTGTCTCAGTCGCCTCGTGGAGACTTCCAAAGAGGTTGAAGCTCTGCAAAAGGAGAACGGACAACTCCGTGCCGTGAATAAGGAATTGCAGAAGAACCTGAACCTTCTCATTCAAGCTTCGCTGGAGAATCGATTTGGCGGTGGCGGATCCTCCGGCCAGACGCAATCGATTCCGTTTGATCTGATGCACGGTTTTCATAACTTGAATCTTGCTGATGGAAAAGAAAACTGTGCTGATTGGAATAGCAATAACATCAATAATAATAACAAGGAGCTTCAGGAAGGTTCAGATGAGAGTCCAACGAGCGTGATAGACAATAACGGTGTTGAAACGGAGAGGTTTTCGCTGCCGAAGAGCATTTCTGTGAGATCCAATGGCTACTTGAAGGTTGCTCAGCCTCCGGCCGTCACAACTACCAATACTGCTGTTCGCACCAAGGGCGCTAACCGCTCCCGCGCCTCCTCCGCTCAAGCTTCAGATACAGTTCAAAAGGTATTTGTGCGAGGAGGGCAGAAAGAGGAAGAGCCTCTTGAGATGGTTGTGTACAACCAGGGGATGTTCAAGACTGAGCTGTGTAACAAATGGCAGGAAACTGGCACTTGCCCTTATGGAGATCACTGCCAATTCGCTCACGGCATTGGGGAGCTTCGCCCAGTGATCCGCCACCCACGCTACAAGACTGAGGTATGCAGGATGGTCCTTGCTGGGGTCGTGTGCCCGTATGGCCATAGATGCCATTTCCGCCATGCACTTACTGAACAAGAGAAAGCTTTATCACAACATAAGCCCAGATCAATGAAGCTGGAAAGATAA 1071 0.5023 MHNKDVCSPSSKSGFGIGINTAGRMQSNAGAFASLYSALTNENLPSLAGNCSNGGGVSLYQYSDSGTEYDSCMIQKHQDMVNRHSMCLSRLVETSKEVEALQKENGQLRAVNKELQKNLNLLIQASLENRFGGGGSSGQTQSIPFDLMHGFHNLNLADGKENCADWNSNNINNNNKELQEGSDESPTSVIDNNGVETERFSLPKSISVRSNGYLKVAQPPAVTTTNTAVRTKGANRSRASSAQASDTVQKVFVRGGQKEEEPLEMVVYNQGMFKTELCNKWQETGTCPYGDHCQFAHGIGELRPVIRHPRYKTEVCRMVLAGVVCPYGHRCHFRHALTEQEKALSQHKPRSMKLER* 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g0352 356 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 273 298 IPR000571 GO:0046872
Tpr1g0352 356 ProSiteProfiles Zinc finger C3H1-type profile. 272 300 IPR000571 GO:0046872
Tpr1g0352 356 SUPERFAMILY CCCH zinc finger 306 340 IPR036855 GO:0046872
Tpr1g0352 356 SUPERFAMILY CCCH zinc finger 269 304 IPR036855 GO:0046872
Tpr1g0352 356 Coils Coil 91 125 - -
Tpr1g0352 356 ProSiteProfiles Zinc finger C3H1-type profile. 310 338 IPR000571 GO:0046872
Tpr1g0352 356 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 15 65 348 - -
Tpr1g0352 356 SMART c3hfinal6 310 337 IPR000571 GO:0046872
Tpr1g0352 356 SMART c3hfinal6 272 299 IPR000571 GO:0046872
Tpr1g0352 356 PANTHER CCCH ZINC FINGER/TIS11-RELATED 65 348 IPR045877 GO:0003729
Tpr1g0352 356 Gene3D - 306 342 - -
Tpr1g0352 356 Gene3D - 267 305 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g0352 Tpr-Chr1 3078888 3082424 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g0352 62 351 C3H Transcription Factor Family AT1G68200 50.340 1.28e-83 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Tpr1g0352 zf-CCCH 2.9e-12 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g0352 K18753 - gmx:100796550 485.337
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g0352 1 3078888 3082424 Tpr1g0352 1 3078888 3082424 ECH