Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g0351 ATGGAGAAAAAGGATAAAGAAATTAAATCATTTAAGGATCTAGGCTTATCGGATGAATTGATCGAAGCTTGTGACAAATTGGGCTGGAAGACTCCCCTAAAGATTCAAATACAAGCAATTCCACCGGCTCTCCGAGGAAAAGATGTCATTGGAATTGCCCAAACGGGTTCTGGTAAAACTGCCGCTTTTGCCCTTCCTATATTGCATGCACTCTTAGAAGACCCAAACCCTTTTTTTGCTTGTGTCTTGTCTCCCACAAGGGAGCTTGCTATTCAAATTTCTGAACAGTTTGAAGCTCTAGGTTCTGTAATTAAGGTCAAGTGTGCTGTGCTCGTTGGAGGGCTTCCCATGGCAAAACAATCCATTACGTTAGCAACGAAGCCTCATATTATTGTTGGGACTCCTGGACGTGTCTTGGATCACCTAAGAAACACCAAAGGATTTTCTCTTGGTAAATTAAAATACTTGGTCTTAGATGAAGCAGACAGGTTGTTGAATGAGGATTTTGAGGAATCACTTAATGAGATTTTAGGAATGATCCCTCGCAAGCGTAGGACATTCCTTTTTTCTGCTACGATGACAAAGAAGGTCGAGAAGCTCCAAAGGGTTTGTTTAAGAAATCCTGTGAAGATTGAAGCATCAACCAAGTACTCTACCGCGAACACACTGAAGCAACAATATCGTTTCGTGCCAGCAAAACACAAGGATTGCTACCTTGTATACATTCTCACTGAAATGGTTGGAAGTACATCAATGGTGTTCACTCGGACATGTGATGCAACTCAGCTTCTTGCTTTTTTTCTTAGGAATCTCGGTCTGAAAGCCATCCCAATTAATGGTCATATGAATCAGCTAAAGCGACTTGGAGCCTTGAATAAGTTCAAGTCCGGGGATTGCAATATTCTCCTTTGTACAGACGTAGTTAGTAGGGGACTGGATATTCCAGAAGTAGATATGGTGATTAACTATGATATTCCCTCAAACCCCAAAGATTATATACATCGTGTGGGAAGGACTGCTCGGGCAGGGCGTTCTGGGGTTGCCATTTCCCTTGTGAACCAACATGAGCTAGAGTGGCACATTCAGATAGAGAATCTTATAGGCAAGAAGCTACTGGAGTATCCTGCACAAGAACAGAAAGTTTTGCTTTTGGAAAAGCGTGTTAGTGAGGCCAAAAGATTAGCTGTAACGAAAATGAAGGCAACTGGAGGGAAGAATAAACTTTGGTCTGATTCAGAAGAGGAAGAGGATGCTGAGACATACTTTGGTCTAAATAGAAGACCCTCTAAGAGGTTTAGAAGAAAATAA 1308 0.4174 MEKKDKEIKSFKDLGLSDELIEACDKLGWKTPLKIQIQAIPPALRGKDVIGIAQTGSGKTAAFALPILHALLEDPNPFFACVLSPTRELAIQISEQFEALGSVIKVKCAVLVGGLPMAKQSITLATKPHIIVGTPGRVLDHLRNTKGFSLGKLKYLVLDEADRLLNEDFEESLNEILGMIPRKRRTFLFSATMTKKVEKLQRVCLRNPVKIEASTKYSTANTLKQQYRFVPAKHKDCYLVYILTEMVGSTSMVFTRTCDATQLLAFFLRNLGLKAIPINGHMNQLKRLGALNKFKSGDCNILLCTDVVSRGLDIPEVDMVINYDIPSNPKDYIHRVGRTARAGRSGVAISLVNQHELEWHIQIENLIGKKLLEYPAQEQKVLLLEKRVSEAKRLAVTKMKATGGKNKLWSDSEEEEDAETYFGLNRRPSKRFRRK* 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g0351 435 Gene3D - 1 216 IPR027417 -
Tpr1g0351 435 PANTHER BNAC02G41920D PROTEIN 6 422 - -
Tpr1g0351 435 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 40 211 IPR014001 -
Tpr1g0351 435 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 9 37 IPR014014 GO:0003724
Tpr1g0351 435 SMART ultradead3 28 227 IPR014001 -
Tpr1g0351 435 SMART helicmild6 262 343 IPR001650 -
Tpr1g0351 435 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 238 382 IPR001650 -
Tpr1g0351 435 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 77 364 IPR027417 -
Tpr1g0351 435 CDD DEADc_DDX47 10 212 IPR044765 GO:0005524
Tpr1g0351 435 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 157 165 IPR000629 -
Tpr1g0351 435 Pfam DEAD/DEAH box helicase 34 200 IPR011545 GO:0003676|GO:0005524
Tpr1g0351 435 Gene3D - 217 389 IPR027417 -
Tpr1g0351 435 Pfam Helicase conserved C-terminal domain 237 343 IPR001650 -
Tpr1g0351 435 PANTHER RNA HELICASE 6 422 - -
Tpr1g0351 435 MobiDBLite consensus disorder prediction 404 423 - -
Tpr1g0351 435 CDD SF2_C_DEAD 223 352 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g0351 Tpr-Chr1 3069279 3076746 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g0351 8 375 Eukaryotic Initiation Factors Gene Family AT3G19760 31.452 4.42e-63 207