Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g0341 ATGGCTTCAACACACATCAGAGACATTCTTACCGCTTTCAATCCTTCTCTCGACTTCTTCGCCATTACCACCGGTGACGGTCGCATTAAGATATGGGATACACTCAAGGGACAGATTCAAACCGAGTTTGCAGATTTTACTTCAACTCATCAAACTAATATATTTGATAAACAAGGACACCTTTCTGTTGATTATACTTGTATCAAGTGGTTATCTTTTCAAACTAAGAGGAAAAGGAAACATTCATCTTCTTTGTTGGTGCTTGGAACTGGTAGTGGTGATGTTTTAGCACTTGATGTTTCTGCTGGTCAATTGTCTTGGAAAATTAATGATTGTCATCCCGGAGGTGTTCGAGCCATTTCGTCTTTGGCAAATGGATCAAACTTTTACACTGCAGGTTCAGATGGAATGATATGCATGATAGATTTCACAACAGGAAATTTGCAGAAGAAATTTAAAGCCTCTTCGAAGGCAATATCTTGCATATCAGTTTCTCCGGATGGGAAGAAGGTAGCTACTGCATCAGCACAATTGAAGATTTTTAACTGTTCTAATGAAAAAAAGATTCAAAAATTCTCTGGTCATCCTGGATCTGTCCGGTGTATGGTCTTCACTGAAGATGGCAAGCATATCCTCTCATCTTCTGCTGGGGAAAGAAACATTGCTGTTTGGAAATTAGATGGTGCTAAAAAGCAGTCAGCTAGTTGTGTTCTTGCAATGGAGCACCCTGCTGTCTTTCTTGATAGCAGGTGCATCGATAATGGAGAAGATGATGAGGCTGGCATATGCGTTTTGGCCATATCAGAAATTGGTCTTTGTTACATTTGGTTTGGAAATAGTATTGATGAACTACGAACTGCAAAACCCACGAAAATATCATTATCTTTGGATGCCATCTCCACCAAAAATTACAAGGGTGCACTTCCGGCAATATATGCTGCAAAATTACAAAGCACCCAGAAGCCATCCTCTGGGAAGGTTTTTCTTGTTTATGGGATGCTTGTAAAACCATCATTTCAAAATGTTTTAGTGCATTCCGGTACAGATGTAAAGTTGAGTGTCTCCCGTGACGGTGTTCTTCTTCCAACGAGTCAATCTCTTGTCAAATCTAAGAAGAGGACGGATGTTCATAGAGTAAATGCACTAGACCGTGCTAATGCTGAGGATGCCTTGCTTCCCATTCCTAAAGTTTTTGATTCTCATGAGAAAGAGGAAGCATTTCAAAACTCTTTGGGCAAGGATGTAATGGATGATTTGCTTATAAGTGGTTCAGCTGATTCTATGGAGATAGATGATGGGATTGCCCAAAGTGAGACTGATGTAATTAGCATGGAGGACCGGATGAGATCACGAGGATTGCTTTACAATGAAAGTGATTATGCATCAAACTTTGAACTTTGTTCGAAATTGTTAAAGGGTATTGATCTGGAAGCTACTCTTCCAAAGAAAAAGGTAAGAGCAGCCGTTTTGTCTATGGAACCAAGCGAAGCATTCAAGCTACTGGAAGTGTTGCTGGCTATATGGCAATCAAGGTCGTCTAGCAGAGAGTGTGTGCTTCCATGGATGTATAACATATTAGTTATTCATGGTCATGATGCTGCTGAAGAATCCGTTACACATATGCTTGATATGGTGTACAAGATTACAAATTCTAGAGGGGCAACTCTTCAGTCTTTGTTGCAATTATCAGGTCGTCTACAACTGGTTACATCACAGATTGATAAGGCTTCTCAGAGAATAAGCCATTCAGTGGATGATCTTGAAACAGACGAAAGTGAAGACGAGGATGAATTTTATCACGAGGATAAAGATGATGCATCTGAAATAAGTACTGACGATGAAAACTAG 1848 0.3994 MASTHIRDILTAFNPSLDFFAITTGDGRIKIWDTLKGQIQTEFADFTSTHQTNIFDKQGHLSVDYTCIKWLSFQTKRKRKHSSSLLVLGTGSGDVLALDVSAGQLSWKINDCHPGGVRAISSLANGSNFYTAGSDGMICMIDFTTGNLQKKFKASSKAISCISVSPDGKKVATASAQLKIFNCSNEKKIQKFSGHPGSVRCMVFTEDGKHILSSSAGERNIAVWKLDGAKKQSASCVLAMEHPAVFLDSRCIDNGEDDEAGICVLAISEIGLCYIWFGNSIDELRTAKPTKISLSLDAISTKNYKGALPAIYAAKLQSTQKPSSGKVFLVYGMLVKPSFQNVLVHSGTDVKLSVSRDGVLLPTSQSLVKSKKRTDVHRVNALDRANAEDALLPIPKVFDSHEKEEAFQNSLGKDVMDDLLISGSADSMEIDDGIAQSETDVISMEDRMRSRGLLYNESDYASNFELCSKLLKGIDLEATLPKKKVRAAVLSMEPSEAFKLLEVLLAIWQSRSSSRECVLPWMYNILVIHGHDAAEESVTHMLDMVYKITNSRGATLQSLLQLSGRLQLVTSQIDKASQRISHSVDDLETDESEDEDEFYHEDKDDASEISTDDEN* 616
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g0341 615 Gene3D - 1 310 IPR015943 GO:0005515
Tpr1g0341 615 Pfam WD domain, G-beta repeat 187 225 IPR001680 GO:0005515
Tpr1g0341 615 Pfam WD domain, G-beta repeat 5 33 IPR001680 GO:0005515
Tpr1g0341 615 MobiDBLite consensus disorder prediction 577 615 - -
Tpr1g0341 615 SUPERFAMILY WD40 repeat-like 12 228 IPR036322 GO:0005515
Tpr1g0341 615 Pfam Dip2/Utp12 Family 480 570 IPR007148 -
Tpr1g0341 615 MobiDBLite consensus disorder prediction 587 615 - -
Tpr1g0341 615 ProSiteProfiles Trp-Asp (WD) repeats profile. 192 234 IPR001680 GO:0005515
Tpr1g0341 615 SMART WD40_4 102 142 IPR001680 GO:0005515
Tpr1g0341 615 SMART WD40_4 2 33 IPR001680 GO:0005515
Tpr1g0341 615 SMART WD40_4 145 182 IPR001680 GO:0005515
Tpr1g0341 615 SMART WD40_4 185 225 IPR001680 GO:0005515
Tpr1g0341 615 PANTHER OS03G0300300 PROTEIN 1 615 - -
Tpr1g0341 615 PANTHER OS03G0300300 PROTEIN 1 615 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g0341 107 226 U-box Gene Family AT2G33340 28.226 1.18e-09 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g0341 K14546 - gmx:100784148 894.034