LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tpr1g0336	ATGGTTTCAAGGTCATATTCAAACTTGTTAGATCTTACTTCATGTGGCTCGCCGGCTTTCGGTTTCGGTCGCGAGAAGAAAAGGCTTCCTAGAGTTGCAACTGTTGCTGGAGTACTATCTGAATTAGATGATGAATCCAACAATAGTGTTGGTTCTGATGCACCTTCCTCCATCTCTCAAGAGAGGATGATCATTGTTGGCAACCAACTTCCATTAAAGGCACAAAGGAAAGAGGAGAATGGTAAATGGGAATTCACTTGGGATGAGGACTCACTTCTTTTACAGCTGAAAGATGGTCTTGGTGATGATGTCGAAACAATCTACATCGGTTGTCTTAAAGAAGAAATCGATCCTATTGAGCAAGATGATGTTGCTCAGTACTTGCTTGACAATTTCAAATGTGTACCAACTTTCCTCCCTCCTGAACTTTTCACTAAATTCTATCATGGTTTCTGTAAACAGCATCTGTGGCCTTTGTTTCATTACATGCTTCCACTGTCACCTGATCTTGGTGGTCGGTTCGATAGATCCCTTTGGCAGGCTTATGTTTCTGTTAACAAGATATTTGCAGATAAAGTGATGGAAGTCATTAACCCTGATGAGGACTTTGTTTGGGTTCATGACTATCACTTGATGGTTCTTCCAACATTTTTGAGAAAGAGATTTAATAGGGCAAGGCTAGGATTCTTCCTCCATAGTCCTTTTCCTTCTTCCGAGATATACCGAACCCTTCCTGTTAGGGATGAACTTCTTAGAGCTCTTCTGAATTCTGACCTTATAGGATTTCATACTTTTGACTATGCTAGACATTTCCTCTCCTGCTGCAGTAGAATGCTAGGGATTGCTTATCAATCAAAGCGAGGCTATATCGGTCTTGAGTACTATGGAAGAACTGTTAGCATTAAGATTCTTCCTGTTGGTATTCATATAGGTCAGCTTGAATCAGTCATGAATCTATCTGAGACAGAAAGCAAGGTTGCGGAGTTAAGAAACAGGTTCAAAGGTCAAACAGTGATGCTTGGGGTGGATGACATGGATATCTTCAAAGGAATCAGCTTAAAACTTTTGGCAATGGAACAATTGCTTTTACAACATGCTGATAAGAGGGGGAAAGTTGTTCTGGTTCAAATCGCAAACCCTGCTAGAGGCCGCGGAAAAGATGTGCAAGAAGTGCAGTGTGAAACTTATGCGACTGTGAAAAGGATAAATGACACATTTGGAAGGCCTGGATACACACCCGTAATCTTGATTGATACAACGCTCCAGAGTTACGAGCGAATCGCTTATTATACAATTGCAGAATGTTGTCTTGTTACAGCAGTGAGAGATGGGATGAACCTTATACCTTATGAGTATATCATTTGTAGACAAGGAAATGAGAAGATAGATGGAATTTTAGGAATAAACTCAAATAACCAAAAGAAGAGCATGCTGGTGGTGTCCGAGTTCATCGGTTGCTCTCCGTCATTAAGTGGCGCAATTCGGGTGAATCCGTGGAATATTGATGCTGTTGCTGAAGCTATGGATTCTGCCTTAATGGTCGCAGAGTCTGAAAAACAAATGCGGCATGAGAAGCATTATAGGTACGTTAGTACGCACGATGTTGCCTATTGGGCTCGTAGCTTCTTGCAGGATCTGGAAAGGGCTTGTAGGGATCATCTGAGGAGGAGATGCTGGGGAATTGGTTTTGGTTTAGGATTTCGAGTAATCGCTTTGGATCCAAACTTTAGAAAGCTATCCGTGGAACATATTGTTTCAGCTTATAAGAGGACAAAGCACCGAGCTATTCTTTTGGATTATGACAGTACTATGGTCCAGCTTGGATCAATTAGTACAACACCTAATGCTGAAGCTGTTTCCATCTTGAATAGCCTGTGCAATGACACCAAGAATTGTGTTTTCATTGTAAGTGGAAAAGAGAGAAAGACTCTTACTGAATGGTTTTCTTCTTGTCAAAAGCTTGGACTTGCTGCAGAGCACGGCTATTTTGTGAGGACAAGTCATACTGAAGAATGGGAAACTTGTGTTTCTGTGCCTGATTTTGACTGGAAACAGATTGCTGAGCCAGTTATGCAGTTATATACAGAAACTACGGACGGTTCTAATATAGAGTCCAAAGAGAGTGCTCTTGTTTGGAATTACGAATTTGCAGACCGAGATTTCGGTTCATGTCAAGCTAAGGAGCTTCTTGATCATCTGGAAAGTGTTCTCACCAATGAGCCTGTTTCAGTTAAAAGTGGCCCAAGCATTGTGGAAGTTAAACCTCAGGGTGTGAGTAAGGGTATTGTAGCAGAACGTATTCTGATAACAATGCAACAAAAGGGAGTGGTTCCAGATTTTGTTCTATGCATTGGAGATGACAGATCCGATGAAGACATGTTTGGAGTAATAACGAGTGCAAGGGCATCGCTATCGCCTATTGCGGATGTTTTTCCTTGTACAGTTGGTCAGAAACCAAGCAAGGCCAAATATTACTTGGAAGACACAAGTGAGATTTTGAGGATGTTGCAGGGTCTTGCCAATGCTTCTGAGCAAACTGCTGATAGAAATTCTTCTCAGTTTCCTCATCATTAA	2574	0.4149	MVSRSYSNLLDLTSCGSPAFGFGREKKRLPRVATVAGVLSELDDESNNSVGSDAPSSISQERMIIVGNQLPLKAQRKEENGKWEFTWDEDSLLLQLKDGLGDDVETIYIGCLKEEIDPIEQDDVAQYLLDNFKCVPTFLPPELFTKFYHGFCKQHLWPLFHYMLPLSPDLGGRFDRSLWQAYVSVNKIFADKVMEVINPDEDFVWVHDYHLMVLPTFLRKRFNRARLGFFLHSPFPSSEIYRTLPVRDELLRALLNSDLIGFHTFDYARHFLSCCSRMLGIAYQSKRGYIGLEYYGRTVSIKILPVGIHIGQLESVMNLSETESKVAELRNRFKGQTVMLGVDDMDIFKGISLKLLAMEQLLLQHADKRGKVVLVQIANPARGRGKDVQEVQCETYATVKRINDTFGRPGYTPVILIDTTLQSYERIAYYTIAECCLVTAVRDGMNLIPYEYIICRQGNEKIDGILGINSNNQKKSMLVVSEFIGCSPSLSGAIRVNPWNIDAVAEAMDSALMVAESEKQMRHEKHYRYVSTHDVAYWARSFLQDLERACRDHLRRRCWGIGFGLGFRVIALDPNFRKLSVEHIVSAYKRTKHRAILLDYDSTMVQLGSISTTPNAEAVSILNSLCNDTKNCVFIVSGKERKTLTEWFSSCQKLGLAAEHGYFVRTSHTEEWETCVSVPDFDWKQIAEPVMQLYTETTDGSNIESKESALVWNYEFADRDFGSCQAKELLDHLESVLTNEPVSVKSGPSIVEVKPQGVSKGIVAERILITMQQKGVVPDFVLCIGDDRSDEDMFGVITSARASLSPIADVFPCTVGQKPSKAKYYLEDTSEILRMLQGLANASEQTADRNSSQFPHH*	858

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tpr1g0336	857	CDD	HAD_TPP	595	831	-	-
	Tpr1g0336	857	TIGRFAM	T6PP: trehalose-phosphatase	592	840	IPR003337	GO:0003824\|GO:0005992
	Tpr1g0336	857	Pfam	Trehalose-phosphatase	597	830	IPR003337	GO:0003824\|GO:0005992
	Tpr1g0336	857	SUPERFAMILY	HAD-like	594	840	IPR036412	-
	Tpr1g0336	857	Gene3D	Glycogen Phosphorylase B;	55	315	-	-
	Tpr1g0336	857	PANTHER	ALPHA,ALPHA-TREHALOSE-PHOSPHATE SYNTHASE [UDP-FORMING] 6	1	847	-	-
	Tpr1g0336	857	Pfam	Glycosyltransferase family 20	62	547	IPR001830	GO:0003824\|GO:0005992
	Tpr1g0336	857	PANTHER	TREHALOSE-6-PHOSPHATE SYNTHASE	1	847	IPR001830	GO:0003824\|GO:0005992
	Tpr1g0336	857	TIGRFAM	HAD-SF-IIB: HAD hydrolase, family IIB	596	796	IPR006379	-
	Tpr1g0336	857	CDD	GT20_TPS	62	547	IPR001830	GO:0003824\|GO:0005992
	Tpr1g0336	857	Gene3D	Glycogen Phosphorylase B;	316	531	-	-
	Tpr1g0336	857	SUPERFAMILY	UDP-Glycosyltransferase/glycogen phosphorylase	62	551	-	-
	Tpr1g0336	857	Gene3D	-	722	856	IPR023214	-
	Tpr1g0336	857	Gene3D	-	593	704	IPR023214	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Tpr1g0336	Tpr-Chr1	2952857	2957664	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tpr1g0336	1	852	Trehalose Biosynthesis Gene Families	AT4G17770	77.427	0.0	1409

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tpr1g0336	K16055		-	gmx:100782799	1542.71