Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g0299 ATGAGACAAGATGGAAATCCGTTAGACCTTAACAATCTGCCTGATGACAACAACTCAAGTAGAGATCATCATCATGCTAAACAACTTCTTCCTAACACCACCTCCTTACAACCAGCTGTTACAGGTAATAAGGAAAAAGAAGGCGGCGAAGAAGATGATGATGATGATAGAAAAGACGGGAAGGTTTATGAATGTAGATTTTGTTCCCTCAAATTCTGCAAGTCACAGGCTCTTGGGGGACACATGAACCGTCACCGCCAAGAGAAGGAAACAGAGAAATTGAACAATGCTCGTCAGCTGCTCTTACGTAATGATCACAATCTTGTTGCTCAAGCTGCTCTTCACCTAGGATGTTATCCACCAATAGCAACAGCAGCAGGGTATAATCCAGCAGGTAACATAGGAGATTATCATCATCACCCAACAATGCCTCTAAGATTCCCAACATCCTTCTCTGCAGCAACAGCAGCAGCAGCTTCATCATCCTCAATCCAAGTACCACCACAACAACCATCTCATCAAGTTCAACAATATTTATATGCTTCACCTTCAAGACCCACCATGTCTTTCCCAACACATTTGATTCCTCAGCATCATCAAATAAATGATTACCGCCGTATGACTCATCATGTTATGAGTAACAACAACAGCCACCACAACATGAACTATGTTGCTGCTGCAAGTGCAAGTGGCGGTGAGTCAAGTTACACGTGCATAGGTGCACCGGTTGGACAAGGTTTTCTTCCAGATCATCATACTTCAACAACGATCAATCGGTTTCAAGAGTGA 789 0.4309 MRQDGNPLDLNNLPDDNNSSRDHHHAKQLLPNTTSLQPAVTGNKEKEGGEEDDDDDRKDGKVYECRFCSLKFCKSQALGGHMNRHRQEKETEKLNNARQLLLRNDHNLVAQAALHLGCYPPIATAAGYNPAGNIGDYHHHPTMPLRFPTSFSAATAAAASSSSIQVPPQQPSHQVQQYLYASPSRPTMSFPTHLIPQHHQINDYRRMTHHVMSNNNSHHNMNYVAAASASGGESSYTCIGAPVGQGFLPDHHTSTTINRFQE* 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g0299 262 ProSitePatterns Zinc finger C2H2 type domain signature. 65 85 IPR013087 -
Tpr1g0299 262 PANTHER ZINC FINGER PROTEIN JAGGED 1 253 IPR045320 GO:0003700
Tpr1g0299 262 PANTHER ZINC FINGER PROTEIN JAGGED 1 253 IPR031113 GO:0007275
Tpr1g0299 262 MobiDBLite consensus disorder prediction 1 57 - -
Tpr1g0299 262 ProSiteProfiles Zinc finger C2H2 type domain profile. 63 90 IPR013087 -
Tpr1g0299 262 Gene3D Classic Zinc Finger 52 115 - -
Tpr1g0299 262 SUPERFAMILY beta-beta-alpha zinc fingers 60 91 IPR036236 -
Tpr1g0299 262 Coils Coil 84 104 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g0299 Tpr-Chr1 2526484 2529646 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g0299 1 252 C2H2 Transcription Factor Family AT1G13400 37.165 2.96e-29 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g0299 - - mtr:MTR_1g110740 221.861