Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g0285 ATGAAGGTTTTCGTCAAGACTCTTAAAGGAACTCACTTCGAAATCGAAGTCACGCCACAAGACACGATTTCCGATGTGAAGAAAAATATAGAAACTGTTCAGGGTGTAGATGTCTATCCTGCTGCACAGCAAATGCTTATTCATCAAGGGAAAGTTCTGAAGGATGGGACCACCTTGGAGGAAAATAAAGTAGCTGAAAATAGTTTCATTGTAATCATGCTTTCAAAGAGTAAGCCTGCGTCCGGTGAAGGGTCTACTGCTTCAAATGCTCCTCCAGCAAAGGCTCCACAGACAAGTGCTGCTCCTACTTCAACCCCCACAGTGTCTGTATCTCAAGCTCCTGCTGCAACTGCGGCAACGCCTGCATCCGTTGCTGCGCCTTCTCCAGCTCCAGCTGCTACTCCGGCTCCTATATCTTCAGCAACTGCTACGGAAGGTTCTGATGTCTATGGGCAGGCGGCATCCAATCTGGTTGCCGGTAGCAACTTGGAGGGAACAGTTCAACAAATCCTAGATATGGGTGGAGGAAGCTGGGATAGGGATACTGTTATTCGTGCTCTTCGAGCTGCCTTCAACAACCCCGAGAGAGCGGTTGAATATTTGTATTCAGGTATCCCTGAACAAGCTGAAGTTCCACCAGTGTCCCGAGTTCCTGCAAGTGCACAACCTGCGAATCCTGAAGCTGCAGCTGCAGCTCCACAAGCAGCACAGCCTGCTCCTGTTACCTCAAGTGGACCTAATGCTAATCCTCTGGACCTCTTTCCCCAGGGCCTCCCAAATATTGGTGGTGCTGCTGGTGCCGGCTCTCTGGATTTTCTCCGCAACAGTCAACAATTCCAAGCATTACGTGCTATGGTGCAGGCAAATCCACAAATATTGCAGCCCATGCTACAGGAGCTTGGCAAACAAAATCCTCAACTTATGAGATTGATTCGAGATCATCAGGCTGACTTCCTTCGCCTGATAAATGAACCTATGGAAGGTGGCGAAGGGAACCTATTGGGACAGATGGCTGCTGGCTTGCCACAACCACAATCAGTAACTGTCACTCCCGAGGAGCGCGAAGCAATTGAACGCCTTGAAGCAATGGGCTTTGATCGTGCTATAGTATTGGAGGTGTACTTCGCTTGCAACAAAAACGAGGAATTGGCCGCCAACTACCTTTTAGACCACATGCATGAGTTCGACGAACAATGA 1197 0.4904 MKVFVKTLKGTHFEIEVTPQDTISDVKKNIETVQGVDVYPAAQQMLIHQGKVLKDGTTLEENKVAENSFIVIMLSKSKPASGEGSTASNAPPAKAPQTSAAPTSTPTVSVSQAPAATAATPASVAAPSPAPAATPAPISSATATEGSDVYGQAASNLVAGSNLEGTVQQILDMGGGSWDRDTVIRALRAAFNNPERAVEYLYSGIPEQAEVPPVSRVPASAQPANPEAAAAAPQAAQPAPVTSSGPNANPLDLFPQGLPNIGGAAGAGSLDFLRNSQQFQALRAMVQANPQILQPMLQELGKQNPQLMRLIRDHQADFLRLINEPMEGGEGNLLGQMAAGLPQPQSVTVTPEEREAIERLEAMGFDRAIVLEVYFACNKNEELAANYLLDHMHEFDEQ* 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g0285 398 Gene3D - 262 326 IPR036353 GO:0003684|GO:0006289|GO:0043161
Tpr1g0285 398 SUPERFAMILY UBA-like 160 216 IPR009060 GO:0005515
Tpr1g0285 398 SUPERFAMILY Ubiquitin-like 1 81 IPR029071 -
Tpr1g0285 398 MobiDBLite consensus disorder prediction 80 118 - -
Tpr1g0285 398 Gene3D - 156 206 - -
Tpr1g0285 398 Pfam XPC-binding domain 270 325 IPR015360 GO:0003684|GO:0006289|GO:0043161
Tpr1g0285 398 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 161 204 IPR015940 -
Tpr1g0285 398 SMART CBM 268 311 IPR006636 -
Tpr1g0285 398 CDD UBA1_Rad23_plant 157 206 - -
Tpr1g0285 398 SUPERFAMILY UBA-like 335 396 IPR009060 GO:0005515
Tpr1g0285 398 Gene3D - 1 80 - -
Tpr1g0285 398 PANTHER UV EXCISION REPAIR PROTEIN RAD23 1 397 - -
Tpr1g0285 398 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 350 391 IPR015940 -
Tpr1g0285 398 PRINTS DNA repair protein Rad23 signature 296 318 IPR004806 GO:0006289
Tpr1g0285 398 PRINTS DNA repair protein Rad23 signature 347 363 IPR004806 GO:0006289
Tpr1g0285 398 PRINTS DNA repair protein Rad23 signature 364 378 IPR004806 GO:0006289
Tpr1g0285 398 PRINTS DNA repair protein Rad23 signature 379 394 IPR004806 GO:0006289
Tpr1g0285 398 SMART uba_6 353 390 IPR015940 -
Tpr1g0285 398 SMART uba_6 163 203 IPR015940 -
Tpr1g0285 398 MobiDBLite consensus disorder prediction 80 140 - -
Tpr1g0285 398 TIGRFAM rad23: UV excision repair protein Rad23 1 396 IPR004806 GO:0006289
Tpr1g0285 398 MobiDBLite consensus disorder prediction 218 244 - -
Tpr1g0285 398 ProSiteProfiles Ubiquitin domain profile. 1 79 IPR000626 GO:0005515
Tpr1g0285 398 Gene3D - 345 392 - -
Tpr1g0285 398 SUPERFAMILY XPC-binding domain 267 332 IPR036353 GO:0003684|GO:0006289|GO:0043161
Tpr1g0285 398 PANTHER UV EXCISION REPAIR PROTEIN RAD23-RELATED 1 397 - -
Tpr1g0285 398 CDD UBA2_RAD23_plant 349 391 - -
Tpr1g0285 398 SMART ubq_7 1 75 IPR000626 GO:0005515
Tpr1g0285 398 Pfam UBA/TS-N domain 353 388 IPR015940 -
Tpr1g0285 398 Pfam UBA/TS-N domain 166 201 IPR015940 -
Tpr1g0285 398 CDD Ubl_Rad23 1 74 - -
Tpr1g0285 398 Pfam Ubiquitin family 3 76 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g0285 Tpr-Chr1 2362116 2366795 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g0285 1 74 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 40.541 4.48e-10 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g0285 K10839 - gmx:100814162 579.711
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g0285 1 2362116 2366795 Tpr1g0285 1 2362116 2366795 ECH