Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g0281 ATGCCCTCCGATGCACACGACTCTCGTCGCAAGCATCGCCGATCATCCTCTCCCGATGACCACGACAAATCCTCCAAACGTCACAAGCACCGCCACCATCATCACCGCCACCGTCACGGAACCAAAAAACGCGACGAGGAAATTCAATTCGATGAAGAAATCGTAGCTGCGGTTCCTTCTCCTAATCCCGCTCCGCGTAATCATCTCCATGAGGATGATGTTGAGGAGGGAGAGATTCTTGATGACGAGGCTTTTGAGGTTGGAAAGAAGCAAATTGAATCCGATGTTGAAGCTGGTGAAATTGAGGTGAAGGATCTTCGATCTGATAAGAAAATTCCGGGACTTCTCGCTAAAAGTCCGAAAACTGAAAGCGAGGACTTTAACAATGGTAAGGTTATTAGTCCTACTTCTGATGCAGAAGATGGGAAATGGCGTCAGAGCTACATTGATTCTCGAATTCATGAAGATGATGATTCTCCAAACCACTCAAGAGCTGAAACTCAAGCTGGCGCTGATGCTTTGGGCAATGGGTATTTAGATGTTAAGTCTTCCAAAAGGGATAAGAGACAGAATGGGGTAGTTGAACATTTTAAAGGAACTGAGAAACTAAAAGATGAGGCACCGGAGGCTAATAGAAGGGAGGTGAATTCCCACAGGAATTCCTCTGAAAGTGGGGAAGAAAAACATAGAATGTCAGGGAATTCTCCTTTGCATGATGGATACCGAAGTCGATCAAGATCAATCGGTCGTACAAGGGACAGGTCTCGTTCTCGTAGTGTAGTAGAAGAGTATGCTCATCGCAAGAGCAGGCACTCTAGGGAACAAGGATCCCTTTATTATACCAGCAGACATAAGACTGACTATGACCTTGACGAGGAAAGAGCGAGGGAATACAGAAGGGAGCATCATCGTGGAAGTAAGGATCTGGTGGAAGATGATAGACTGGAACACAGTACCAGGTACCACAGTCGGGAGGCCCGAGATAGGGATAGGGATAAGGATAGGAGTAGAGATAAAGATGTGGATAGAGACTTGCACAGGGAAAAGAAGCGGGAGGAAACTAGCAAGAATAAGGAGGTTGATTGGGTGCGTAGAAGGGAAAAAGAACGTGGAAGGAGCCATGAGAGGCATAGAAAGGATGTGGAAAAAGATAGGAACAGGGAAAGTGACGAGGGTAGGGATAGGAGAAGAGAAAAGGAAAGAGATAGGAGCAGGGACACAGTTTATGAGAGGGATAGGAGAAGGGAATTGGAAAGAGATATAAGTAGAGACAGACCAAGGGGCGGTGATAGAGAGAGAGATTGGAAGAGTGAATGGGATTATAGGAAACGGGAAAGGGATGATATTAAGGAGAGGGAAAGACGAGATGATAGATATCGGCACAATGATAAAGACGCTCCTAATGTTAACGATAAACATATGCGTCGGGAGGATGATAATGACAGTGGAGATAGATATAAAAAACATTCAAGACATGAAGAAAATGGATACCATGCAGACAGGAAGCGAAACTATACCATGGAAGAGGATGAAAGGAAACTAAAAGGCAACGAGGTTGAACAAGATGATGTAGATGAGGATATATTGGAATTACCTGAGCAAGAAGAGGAAGATCTGAACAGAATCAAAGAGGAGAGTAGAAGAAGAAGGGAAGCAATAATGGAGAAATACAAGAAGCAGAACCAGCAAATAGAACAAGCAGCTGGAAATGAAAGAAAAGACAAGGACTTGGAGATTCATGCTGACATTTCTAAATCAGTTGATGGTAAGAGTGATGATGTTGATGATGCGGAACCATCATTTTCTGTTGGGAAATCTCCACCGGAAAATGTGGACGTTGGCTCAGAGAAGGTACCCGGTGCTGGGGGCCTAGGCGAGGGTACTCCAAAGAGCGAGAGGTCAGCTGACAAGTATTGTGACGATATATTTGGTGAGACACCAACTGGAGTTCGGAAGTCGGGAAAAGGAGATGGGTTACTGATTGAGAGGGTTGGGCTGCATGACAATTGGGATGATGCAGAGGGATATTACAGCTATCGTTTTGGTGAAATACTTGATGGGCGATATGAAGTTACTGCTGCACACGGGAAAGGTGTCTTTTCAACAGTTGTACGTGCTAAGAATCTAAAAGCTGGTAATGGCGAGCCAGATGAAGTAGCAATAAAAATAATTCGTAATAATGACACCATGTACAAGGCTGGTTTGGATGAATTGGTTGTTTTGAAGAAATTAGTAGGTGCAGATCCGGATGATAAACGTCATTGTGTTCGTTTCCTTTCAAGTTTTAAGTACAGAAATCATCTATGTTTAGTTTTTGAATCTCTAAATATGAATCTGCGTGAGGTTTTGAAGAAGTTTGGTCGCAATATTGGGCTTAGGCTAACAGCTGTGAGGGCATATGCAAAACAGCTTTTTATTGCACTGAAGCATCTCCGTAACTGTGGTGTTTTGCACTGTGATATAAAGCCTGATAATATGTTGGTCAATGAGGCTAAAAATGTTTTGAAGCTTTGTGACTTTGGTAATGCCATGTTTGCTGGTAAAAATGAAGTAACACCATATCTTGTGAGTCGCTTTTATCGTGCCCCTGAAATAATTCTTGGCTTGCAGTATGATCATCCGTTGGATATTTGGTCTGTAGGCTGTTGTTTGTATGAATTGTATACAGGGAAGGTTCTTTTTCCAGGGCTCACAAACAATGACATGCTGCGACTTCACATGGAATTGAAGGGCCCTTTTCCAAAAAAGATGCTTCGTAAGGGAGCATTTACTGAACAACATTATGACCAGGATCTAAGTTTTTATGCTACTGAGGAGGATCCTGTAACAAAAAAGACCATTAAGCGGATGATTCTTAACATAAAGGCGAAAGATATTGGAACAATCATCACTGGCTCTGGGGAGGATCCAAAAATGGTGGCCAATTTTAAAGATCTTCTGGATAAAATTTTCGTCTTGGATCCGGAAAAGAGGTTGACAGTCTCACAAGCATTGAACCACCCATTCATCACTGGCAAGTGA 3021 0.4316 MPSDAHDSRRKHRRSSSPDDHDKSSKRHKHRHHHHRHRHGTKKRDEEIQFDEEIVAAVPSPNPAPRNHLHEDDVEEGEILDDEAFEVGKKQIESDVEAGEIEVKDLRSDKKIPGLLAKSPKTESEDFNNGKVISPTSDAEDGKWRQSYIDSRIHEDDDSPNHSRAETQAGADALGNGYLDVKSSKRDKRQNGVVEHFKGTEKLKDEAPEANRREVNSHRNSSESGEEKHRMSGNSPLHDGYRSRSRSIGRTRDRSRSRSVVEEYAHRKSRHSREQGSLYYTSRHKTDYDLDEERAREYRREHHRGSKDLVEDDRLEHSTRYHSREARDRDRDKDRSRDKDVDRDLHREKKREETSKNKEVDWVRRREKERGRSHERHRKDVEKDRNRESDEGRDRRREKERDRSRDTVYERDRRRELERDISRDRPRGGDRERDWKSEWDYRKRERDDIKERERRDDRYRHNDKDAPNVNDKHMRREDDNDSGDRYKKHSRHEENGYHADRKRNYTMEEDERKLKGNEVEQDDVDEDILELPEQEEEDLNRIKEESRRRREAIMEKYKKQNQQIEQAAGNERKDKDLEIHADISKSVDGKSDDVDDAEPSFSVGKSPPENVDVGSEKVPGAGGLGEGTPKSERSADKYCDDIFGETPTGVRKSGKGDGLLIERVGLHDNWDDAEGYYSYRFGEILDGRYEVTAAHGKGVFSTVVRAKNLKAGNGEPDEVAIKIIRNNDTMYKAGLDELVVLKKLVGADPDDKRHCVRFLSSFKYRNHLCLVFESLNMNLREVLKKFGRNIGLRLTAVRAYAKQLFIALKHLRNCGVLHCDIKPDNMLVNEAKNVLKLCDFGNAMFAGKNEVTPYLVSRFYRAPEIILGLQYDHPLDIWSVGCCLYELYTGKVLFPGLTNNDMLRLHMELKGPFPKKMLRKGAFTEQHYDQDLSFYATEEDPVTKKTIKRMILNIKAKDIGTIITGSGEDPKMVANFKDLLDKIFVLDPEKRLTVSQALNHPFITGK* 1007
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g0281 1006 MobiDBLite consensus disorder prediction 143 163 - -
Tpr1g0281 1006 MobiDBLite consensus disorder prediction 568 599 - -
Tpr1g0281 1006 SUPERFAMILY Protein kinase-like (PK-like) 676 1005 IPR011009 -
Tpr1g0281 1006 Coils Coil 543 574 - -
Tpr1g0281 1006 Gene3D Transferase(Phosphotransferase) domain 1 749 1004 - -
Tpr1g0281 1006 ProSitePatterns Serine/Threonine protein kinases active-site signature. 816 828 IPR008271 GO:0004672|GO:0006468
Tpr1g0281 1006 MobiDBLite consensus disorder prediction 1 48 - -
Tpr1g0281 1006 SMART serkin_6 689 1003 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr1g0281 1006 MobiDBLite consensus disorder prediction 181 235 - -
Tpr1g0281 1006 MobiDBLite consensus disorder prediction 25 41 - -
Tpr1g0281 1006 Coils Coil 89 109 - -
Tpr1g0281 1006 ProSiteProfiles Protein kinase domain profile. 689 1003 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr1g0281 1006 PANTHER DUAL SPECIFICITY PROTEIN KINASE 368 1006 - -
Tpr1g0281 1006 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 368 1006 - -
Tpr1g0281 1006 MobiDBLite consensus disorder prediction 1 24 - -
Tpr1g0281 1006 MobiDBLite consensus disorder prediction 243 520 - -
Tpr1g0281 1006 CDD STKc_PRP4 688 1003 IPR044092 GO:0004674|GO:0006468|GO:0045292
Tpr1g0281 1006 Gene3D Phosphorylase Kinase; domain 1 660 748 - -
Tpr1g0281 1006 MobiDBLite consensus disorder prediction 535 558 - -
Tpr1g0281 1006 Pfam Protein kinase domain 691 1003 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr1g0281 1006 MobiDBLite consensus disorder prediction 107 634 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g0281 Tpr-Chr1 2337730 2344416 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g0281 696 1000 Core Cell Cycle Gene Families AT1G66750 30.380 5.95e-28 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_DYRK-PRP4 Tpr1g0281 Pkinase 1.3e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g0281 K08827 - gmx:100776908 1269.6