Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g0273 ATGAATATGAAAACAAAGAGTTTGTTGGATCATGATTCTAAGAGAAGCCAAGAGCTTCAACATGGTTCACAGAACAACCCAAAAAATTGTGTCATAGTAAGAAAGTACATCCCTGTTGCAGACAGATCTCATGTTCTTGAGATCACTACCGGAACTGATGTATTAAAATGTCTATTTGATTACATTTATTGTCGAGGGAGGGGCATCACCATCCTCAGTGGAAATGGAGAGGTGGCTAATGTCACCCTTCGTCAACCCACGGGGAGAATTGAAACCTTTATGGGAAGGTTCAATATTCTGTCAATATTTGGGACCATTCACCCACCGATGACTCCGGTAAGTGAAGGAGGATTAGAAGTTTTCTTAGCAAGCACTACAGGACAAATAATTGGGGGAAGTGTTATGCCCCCTCTGGTGGCTTTGGGTCCAGTGGTGTTGGTGGTTGTTTCCTTTGCAAACATTGCAGATGGCCAAATGGAAGAAGGCGATGTTGACTTGTTCAATGGTGGAGAATCAACATCTGAAATGAGTAACGTCGTCAAACGTCCCTTATTCTCTCGTCTCTAG 567 0.4286 MNMKTKSLLDHDSKRSQELQHGSQNNPKNCVIVRKYIPVADRSHVLEITTGTDVLKCLFDYIYCRGRGITILSGNGEVANVTLRQPTGRIETFMGRFNILSIFGTIHPPMTPVSEGGLEVFLASTTGQIIGGSVMPPLVALGPVVLVVVSFANIADGQMEEGDVDLFNGGESTSEMSNVVKRPLFSRL* 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g0273 188 MobiDBLite consensus disorder prediction 1 24 - -
Tpr1g0273 188 CDD DUF296 42 151 IPR005175 -
Tpr1g0273 188 Gene3D - 41 165 - -
Tpr1g0273 188 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 13 154 IPR014476 GO:0003680
Tpr1g0273 188 SUPERFAMILY AF0104/ALDC/Ptd012-like 42 155 - -
Tpr1g0273 188 Pfam Plants and Prokaryotes Conserved (PCC) domain 42 152 IPR005175 -
Tpr1g0273 188 ProSiteProfiles PPC domain profile profile. 38 173 IPR005175 -
Tpr1g0273 188 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 29 13 154 - -
Tpr1g0273 188 MobiDBLite consensus disorder prediction 1 18 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g0273 Tpr-Chr1 2299683 2300249 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g0273 14 153 AT-hook Motif Nuclear Localized (AHL) Family AT1G76500 48.344 5.68e-35 123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g0273 - - mnt:21407524 138.658