Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g0264 ATGGCTGGAAAAGAAGAGAATCGAATATTTGTTGGTGGATTGGGTTGGGATGTTACAGAACGTCAGATTGAACATGCCTTTGATCGTTACGGCAAAATTCTTGAAGTCCAGATCATGATGGAAAGGGATACAGGACGTCCACGTGGATTTGGGTTTATAACATTTGCTGATCATCGGGGAATGGAGGATGCAATCAAGGAAATGGATGGACGTGAAATTGGTGATCGCATCATCTCAGTCAACAAGGCACAGCCTAGGATGGGGGGTGATGATGCAGACCATCGTTACAGAGGTGGCTTCTCTTCAGGTGGTAGGGGAAGCTATGGGGCTGGAGATAGGGTAGGACAGGATGACTGTTTCAAATGTGGCCGTCCAGGGCACTGGGCCCGAGATTGTCCTTTGGCAGGAGGTGATGGTGGTCGTGGTCGGGGTGGTGGTCCATTTTCTTCACGTCCTAGGTTTGGAGGTGCTGGTGGACACGGGGATCGCCTTGGTGAACGTGAGCGATACATTGATGATCGTTATGATGGAGGACGTTATGGGGATAGGGACCGTTTAGACACCCGAGACTACAAATACAGTGGCCGTGATCGCTATGCTAGTGACAGGTATCCAACAAGTGGAGATCGTTTTGCAAGTGATCGATATGGCAGTGGCTCAGACTACCCGCAAAATGGTTATGGGAAGGAAAGAGGCTATGACCGGTATGGTGGTGCTCGTGGAGGTGCTGATAGAAATGGAAGTGGAATGCCAGCTCGCGATGAAGGAAGAAGTTATAGGGGTAGGGCTGGTCCTTATGACCGCCCCAGCAGAGCTGCTCGTCCATCATCATTTGACCGCTACTGA 846 0.5047 MAGKEENRIFVGGLGWDVTERQIEHAFDRYGKILEVQIMMERDTGRPRGFGFITFADHRGMEDAIKEMDGREIGDRIISVNKAQPRMGGDDADHRYRGGFSSGGRGSYGAGDRVGQDDCFKCGRPGHWARDCPLAGGDGGRGRGGGPFSSRPRFGGAGGHGDRLGERERYIDDRYDGGRYGDRDRLDTRDYKYSGRDRYASDRYPTSGDRFASDRYGSGSDYPQNGYGKERGYDRYGGARGGADRNGSGMPARDEGRSYRGRAGPYDRPSRAARPSSFDRY* 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g0264 281 Pfam Zinc knuckle 119 133 IPR001878 GO:0003676|GO:0008270
Tpr1g0264 281 SUPERFAMILY RNA-binding domain, RBD 4 111 IPR035979 GO:0003676
Tpr1g0264 281 Gene3D - 1 114 IPR012677 -
Tpr1g0264 281 ProSiteProfiles Zinc finger CCHC-type profile. 119 133 IPR001878 GO:0003676|GO:0008270
Tpr1g0264 281 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 85 IPR000504 GO:0003723
Tpr1g0264 281 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN RZ1B-LIKE 1 244 - -
Tpr1g0264 281 MobiDBLite consensus disorder prediction 160 204 - -
Tpr1g0264 281 PANTHER TRANSFORMER-2-RELATED 1 244 - -
Tpr1g0264 281 SUPERFAMILY Retrovirus zinc finger-like domains 103 137 IPR036875 GO:0003676|GO:0008270
Tpr1g0264 281 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 78 IPR000504 GO:0003723
Tpr1g0264 281 SMART rrm1_1 8 81 IPR000504 GO:0003723
Tpr1g0264 281 Gene3D - 115 143 - -
Tpr1g0264 281 MobiDBLite consensus disorder prediction 137 281 - -
Tpr1g0264 281 SMART c2hcfinal6 118 134 IPR001878 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g0264 Tpr-Chr1 2207030 2211903 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g0264 9 88 C2H2 Transcription Factor Family AT2G19380 40.000 1.19e-13 68.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g0264 - - gmx:100776333 422.165
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g0264 1 2207030 2211903 Tpr1g0264 1 2207030 2211903 ECH