Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g0260 ATGGCAGTAGGTAGTTCAATTGGTGTTCATGGTTGGGGAGACATGAAGAGTCTCACCGTCCAGTTCGTTACTGGACGGTGGTTCATCCTGTTTGCATCCTTTCTAATAATGTCAGCTGCCGGAGCCACCTACATGTTCGGCTTATACTCCGGCGACATAAAAACAACCCTTGGTTATGACCAAAGCACACTAAACCTCCTTAGTTTTTTCAAAGATTGTGGTACCAACGTTGGTGTCCTTTCGGGACTAATCAATGAAATCTATCCACCTTGGATAGTTTTAGCAATAGGTGCTATTCTAAATTTTTTTGGTTACTTCATGATTTGGTTATCAGTTACCAAAAAAATAGCAACACCAAAAGTTTGGCAAATGTGTCTTTACATTTTCATAGGTGCTAATTCTCAATCTTTTGCAAACACTGGTTCACTTGTTACTTGTGTTAAGAATTTCCCCGAATCTCGCGGGGCGGTTTTGGGAGTTCTTAAAGGCTATGTTGGTCTTAGTGGTGCAATTATCACACAACTTTATTCTGCTATTTATTATGATGATACAAAGGCTTTGATTTTGTTTATAGGTTGGTTTCCTGCTGCTATTTCTTTCGCTTTTCTTGGAACCGTTCGATATATGAAACCTGTTCGACAAGTTAACGAGCTTAATGTGTTTTATAAATTCTTGTACATATCACTTGGTCTGGCTGGTTTTTTGTTTGTTATGATCATAATTCAAAAGAAGGTCAGTTTCTCACAGAGTGAATTTGGTGTAAGTGCCGGTGTGGTAATTTTCTTGCTTTTTCTTCCACTTGCTGTTGTTTTTACTGAAGAGAACAAGATTTGGCGGAGTAAAAGATTAGCTTTGGTTGATCCTTCACCAGTGAAAATAGTAACACAAAGTGAAACTGTTACTGAAACTGAAAAAGAAAAAGTTGTTTCAGTTTCAGATCCAAAAAAAGATACAAAATGGTATGAAGATGTGTTTAATCCACCAGCAAGAGGTGAAGATTATACAATACTTCAAGCACTTTTCAGCATAGACATGTTGATACTATTTGTAGCATGTATTTGTGGTATTGGTGGAACATTGACAGCAGTTGATAATCTTGGTCAGATAGGAACATCACTTAGATATCAGAAGAAAAGCATAAGCACTTTTGTTTCATTAGTTAGTATTTGGAATTATCTAGGACGTGTTTTCGCAGGATTTGTTTCAGAACATTTTCTAACGAAGTATAGATTTCCTCGTCCTCTTATGCTTACTTTAACAATGTTTGTGTCTTGTATTGGACATCTTTTGATAGCATTTGATGTTCCAAATGGTCTCTACATAGCTTCTGTAATTATTGGCTTTTGTTTTGGTGCTCAATGGCCATTACTTTTTGCTATAATTTCAGAACTTTTTGGACTTAAATATTATGCAACTTTGTATAATCTTGGAAGTGTAACAAGTCCACTTGGATTATATGTTCTTAATGTGAGGGTCACTGGTCATTTATATGACAAAGAAGGTACCAAACAATTAGAAGCACTTGGACTAAAGAGAAAAGAAGGACAACAATTGAATTGTGTTGGTGTTAATTGTTTTAAGTTATCTTTCATTATTATTGCAGCTGCTACATTTTTTGGTGCTGTTATTTCACTTCTTTTGGTGGCTAGGACAAGAAAGTTTTACAAGGGTGACATATACAAGAGATTCAGAGAAGAAGCTATGGTGACAGAAGATGAAATGTTGGAGAAGAAGAACGTAGGAAAGACATTTCAAAAAGTGTAG 1764 0.36 MAVGSSIGVHGWGDMKSLTVQFVTGRWFILFASFLIMSAAGATYMFGLYSGDIKTTLGYDQSTLNLLSFFKDCGTNVGVLSGLINEIYPPWIVLAIGAILNFFGYFMIWLSVTKKIATPKVWQMCLYIFIGANSQSFANTGSLVTCVKNFPESRGAVLGVLKGYVGLSGAIITQLYSAIYYDDTKALILFIGWFPAAISFAFLGTVRYMKPVRQVNELNVFYKFLYISLGLAGFLFVMIIIQKKVSFSQSEFGVSAGVVIFLLFLPLAVVFTEENKIWRSKRLALVDPSPVKIVTQSETVTETEKEKVVSVSDPKKDTKWYEDVFNPPARGEDYTILQALFSIDMLILFVACICGIGGTLTAVDNLGQIGTSLRYQKKSISTFVSLVSIWNYLGRVFAGFVSEHFLTKYRFPRPLMLTLTMFVSCIGHLLIAFDVPNGLYIASVIIGFCFGAQWPLLFAIISELFGLKYYATLYNLGSVTSPLGLYVLNVRVTGHLYDKEGTKQLEALGLKRKEGQQLNCVGVNCFKLSFIIIAAATFFGAVISLLLVARTRKFYKGDIYKRFREEAMVTEDEMLEKKNVGKTFQKV* 588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g0260 587 Pfam Nodulin-like 26 271 IPR010658 -
Tpr1g0260 587 Gene3D MFS general substrate transporter like domains 338 556 IPR036259 -
Tpr1g0260 587 CDD MFS_Mch1p_like 25 541 - -
Tpr1g0260 587 Pfam Major Facilitator Superfamily 348 552 IPR011701 GO:0022857|GO:0055085
Tpr1g0260 587 SUPERFAMILY MFS general substrate transporter 25 554 IPR036259 -
Tpr1g0260 587 PANTHER MFS TRANSPORTER 9 583 - -
Tpr1g0260 587 PANTHER UNCHARACTERIZED NODULIN-LIKE PROTEIN 9 583 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g0260 Tpr-Chr1 2179859 2186444 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g0260 13 566 Nodulin-like Gene Family AT2G39210 70.304 0.0 812
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g0260 - - pvu:PHAVU_007G024800g 943.34
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g0260 1 2179859 2186444 Tpr1g0260 1 2179859 2186444 ECH