Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g0256 ATGCTTCTTCCTATGAGCTGCATTCTTCTTTTAATGTGTCTATTATTCACACCCCAAATCAAAGCTTCTTCTACTAAAACTTTCTCAAATCTTACCTTACCCCACCAACATCCTTACCCTGAAGCTGTTGTTCATGAATTTCAACAGAAAATCAATGTATCACTTTCCAGAAGAGAACTACTCGGAAAAAACCAAGGTTCTTGTTTAACAGGAAACCCAGTCGACGATTGTTGGAGATGCGACACAAACTGGGCACAAAACCGTCAAAAGCTAGCAGAATGTGGAATCGGATTCGGACGCGCTGCCATGGGAGGTAAAAACGGTCAGATCTACATCGTAACAGATTCTTCCGACAAAGACCCAGCAAATCCAATTCCAGGAACACTCCGTCACGCCGTAATTCAAGACGAACCACTCTGGATAATCTTCTCTAACGACATGACAATAAACCTCCGTCATGAATTAATCTTCAACTCATTCAAAACTGTCGACGGCCGCGGCGCAAATGTTCAAATCACCGGTCACGGTTGTATCACACTCCAATACATCTCAAACATTATCATCCACAACATTCACGTTCATCACTGTAAACCATCTGGTAACACTAACATACGCGCTAGTCCAACACATGTTGGATTCAGAGGAATATCAGACGGTGATGGAATATCAATATTCGGTTCTCGTAACATCTGGATCGATCATTGTTCTCTGTCTTATTGTACTGATGGTTTAATTGATGCGATAATGGGTTCAACTGCAATAACGATTTCTAATAATCATTTTGCACATCATGATGAAGTTATGTTATTAGGTCATAATGATAAGTATAGTCCTGATAGAGGAATGCAAGTTACGATTGCTTTTAATCATTTTGGGGAAGGACTTGTTCAAAGAATGCCTCGGTGTAGACTTGGTTATATTCATGTTGTCAATAATGATTTTACTCAATGGGAAATGTATGCTATCGGAGGTAGTGCTAATCCTACTATTAACAGTCAGGGTAACCGTTACACCGCTCCTTCCGATCCAAATGCTAAAGAGGTGACGAAGCGCGTGGAGACAGATGATAAAGAATGGAGTGGTTGGAATTGGAGGACGGATGGGGATATAATGGTAAATGGGGCGTTCTTTGTACCGTCGGGGGTGGGGATGAGTGCTCAGTATGCCGAGGCGTCTAGTGTGCAAGCGAAGTCCGTCGAGCAAATTGATCAGCTCACTATGTACTCCGGTGTATTCGGTGATCCCAGGGATAATGGAGATATATATCCCGGTTTCAACGGTGGTGGGACCACAACTGGAGCCTCTAGCAAGGGTTACAATGAAAATGGGGGGTCCAGTAGTAGTGACGATGGAGACTTCTTTGGGATGATATTCAAAGGTAGTACCAGCCAAGCAGCACCGCCACAACCCTACTCATCAATTTTATTTCTTTCAACTTTTTTGTCTCTTTTAATTATTTTTATTTTGGACATTACCACCAACTATGATATTCTATTATTATTATTATTATGA 1512 0.416 MLLPMSCILLLMCLLFTPQIKASSTKTFSNLTLPHQHPYPEAVVHEFQQKINVSLSRRELLGKNQGSCLTGNPVDDCWRCDTNWAQNRQKLAECGIGFGRAAMGGKNGQIYIVTDSSDKDPANPIPGTLRHAVIQDEPLWIIFSNDMTINLRHELIFNSFKTVDGRGANVQITGHGCITLQYISNIIIHNIHVHHCKPSGNTNIRASPTHVGFRGISDGDGISIFGSRNIWIDHCSLSYCTDGLIDAIMGSTAITISNNHFAHHDEVMLLGHNDKYSPDRGMQVTIAFNHFGEGLVQRMPRCRLGYIHVVNNDFTQWEMYAIGGSANPTINSQGNRYTAPSDPNAKEVTKRVETDDKEWSGWNWRTDGDIMVNGAFFVPSGVGMSAQYAEASSVQAKSVEQIDQLTMYSGVFGDPRDNGDIYPGFNGGGTTTGASSKGYNENGGSSSSDDGDFFGMIFKGSTSQAAPPQPYSSILFLSTFLSLLIIFILDITTNYDILLLLLL* 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g0256 503 Gene3D - 71 413 IPR012334 -
Tpr1g0256 503 PRINTS Pollen allergen Amb family signature 94 111 IPR018082 -
Tpr1g0256 503 PRINTS Pollen allergen Amb family signature 118 143 IPR018082 -
Tpr1g0256 503 PRINTS Pollen allergen Amb family signature 154 170 IPR018082 -
Tpr1g0256 503 PRINTS Pollen allergen Amb family signature 218 239 IPR018082 -
Tpr1g0256 503 PRINTS Pollen allergen Amb family signature 298 317 IPR018082 -
Tpr1g0256 503 PRINTS Pollen allergen Amb family signature 320 339 IPR018082 -
Tpr1g0256 503 PRINTS Pollen allergen Amb family signature 362 386 IPR018082 -
Tpr1g0256 503 PRINTS Pollen allergen Amb family signature 391 414 IPR018082 -
Tpr1g0256 503 PANTHER PECTATE LYASE 6 433 - -
Tpr1g0256 503 Pfam Pectate lyase 154 335 IPR002022 -
Tpr1g0256 503 SMART amb_all 146 343 IPR002022 -
Tpr1g0256 503 PANTHER PECTATE LYASE 18-RELATED 6 433 IPR045032 GO:0030570
Tpr1g0256 503 SUPERFAMILY Pectin lyase-like 63 384 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g0256 Tpr-Chr1 2144220 2150823 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g0256 1 487 Polysaccharide Lyase AT3G53190 61.382 0.0 574
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g0256 K01728 - gmx:100808438 791.956
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g0256 1 2144220 2150823 Tpr1g0256 1 2144220 2150823 ECH
Tpr1g0256 1 2144220 2150823 Tpr7g1211 7 12390308 12392567 ECH