Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g0253 ATGGGAAAGAAAAATTTGAAACTAACTTCTCTTTTCAAAACCAAAGAATCACATCCATGGAAATTCTTGCCCTCTTGTAATCATCATCCAAAAACTGTTTCTTTTAGAACTGGTGTTGATGATGACATATTCAAAACAGTTAATTCTGTTTTTTTCGACCAAACCGAAAACAACATTATTGAAACACCAAAATCATGGTTCACAACATCATCAGAATCTGCAAGTTTCTCAACACAATCAGAAGAATATTGTTTCTACAACGACGGCGAATCATTAGAGACATTGGTTGCCGGAGTTAAGTCGGAGAGGTCATCTGAAAGACTGTTTTTCGAAGCAGAAGACACGAGTTCGATCTTGGAAAAGGCGAAAGCGGATAGTTTTCCGTTTAAAGAAAGTGTTGTGTTAGCTATGGAATCAGATGATCCATATAAAGATTTTAAGAGATCAATGGAAGAAATGGTTGAGTCACATGGTGTGAAAGATTGGGAAGGTTTGGAAGAGCTTTTGAGTTGGTATTTAAGAGTTAATGGTAAAAATAATCATGGTTTTATTGTTGGTGCTTTTGTTGATTTGTTGATTAGTTTAGCAGGTTCTAATTCTAATAATGATTCTAATTCTGATTTAACTTTATATTCTTCTGCTGTTTCTTCTTTTGGTTCTTCTTCACCTTTGTACCTATGTGAGAGACAGAATGAGATTACTGAGATTGTTGAAGATAATAATAATGTAACAGCTTCTTAG 741 0.3414 MGKKNLKLTSLFKTKESHPWKFLPSCNHHPKTVSFRTGVDDDIFKTVNSVFFDQTENNIIETPKSWFTTSSESASFSTQSEEYCFYNDGESLETLVAGVKSERSSERLFFEAEDTSSILEKAKADSFPFKESVVLAMESDDPYKDFKRSMEEMVESHGVKDWEGLEELLSWYLRVNGKNNHGFIVGAFVDLLISLAGSNSNNDSNSDLTLYSSAVSSFGSSSPLYLCERQNEITEIVEDNNNVTAS* 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g0253 246 PANTHER TRANSCRIPTION REPRESSOR OFP7-RELATED 6 223 IPR038933 GO:0045892
Tpr1g0253 246 ProSiteProfiles OVATE domain profile. 135 194 IPR006458 -
Tpr1g0253 246 PANTHER TRANSCRIPTION REPRESSOR OFP13 6 223 - -
Tpr1g0253 246 TIGRFAM A_thal_3678: uncharacterized plant-specific domain TIGR01568 133 196 IPR006458 -
Tpr1g0253 246 Pfam Transcriptional repressor, ovate 139 195 IPR006458 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g0253 Tpr-Chr1 2104749 2105695 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF OFP Tpr1g0253 Ovate 7.7e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g0253 - - mtr:MTR_1g111640 370.548
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g0691 6 5714224 5715366 Tpr1g0253 1 2104749 2105695 ECH
Tpr1g0253 1 2104749 2105695 Tpr1g0253 1 2104749 2105695 ECH