Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g0247 ATGCATCAGAAGACAATTGACATGGCTGCCGCCGCTGCCAGAACACTATGGCCAACTCAGTGGACTCGTGAAGACAACAAGCTTTTCGAGAAAGCTCTAATTACTGTGCCGGAGAATTCATCTAACCGGTGGGAGGAAATTGCTGAAAAAATTCCCGGTAAGTCGGCAGCACAAGTGAAGGATCACTACGAGGATTTGGTCCATGATATTTTGGAAATTGAATCGGGTCGGGTTGAACTTCCAAACTATCCTGATGACCTGGATGTGAATAGTGGCAGTAGAATGTCTAGACATGGTGATAACGAGAAGCAGAAGAAGAGGAAAGGAAAACCATGGACCGAAGAAGAACATAAGTCGTTTCTTTCTGGGCTTAAGGAATACAAAGAAGGGGAATGGAAACTCATTTCAAGATACTATGTTAAGACAAGAACACCAACACAAGTAGCAAGTCATGCTCAAAAGTACTTTCTTCGCAAGAATGAAGCGAATAAACATAAAGAGAGGAAAAGATCAAGCATTCATGACATTACATTGGAAGATAGTAACTCAGCTCCAACGCCTATTGATCGGAATTGTGTTCTGCCTCCCAGTGTTGGTTCATTGCACCAGTCTGAAGGAATGTATTATTTTCCCTCCAACAGTATGCAAGATCAAATGGGTTCACAAATGCATTAG 675 0.4237 MHQKTIDMAAAAARTLWPTQWTREDNKLFEKALITVPENSSNRWEEIAEKIPGKSAAQVKDHYEDLVHDILEIESGRVELPNYPDDLDVNSGSRMSRHGDNEKQKKRKGKPWTEEEHKSFLSGLKEYKEGEWKLISRYYVKTRTPTQVASHAQKYFLRKNEANKHKERKRSSIHDITLEDSNSAPTPIDRNCVLPPSVGSLHQSEGMYYFPSNSMQDQMGSQMH* 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g0247 224 MobiDBLite consensus disorder prediction 162 184 - -
Tpr1g0247 224 CDD SANT 21 67 IPR001005 -
Tpr1g0247 224 Gene3D - 18 80 - -
Tpr1g0247 224 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 104 160 IPR017930 -
Tpr1g0247 224 Pfam Myb-like DNA-binding domain 20 65 IPR001005 -
Tpr1g0247 224 Pfam Myb-like DNA-binding domain 110 156 IPR001005 -
Tpr1g0247 224 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 21 71 IPR017930 -
Tpr1g0247 224 CDD SANT 111 156 IPR001005 -
Tpr1g0247 224 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 18 220 IPR043363 -
Tpr1g0247 224 ProSiteProfiles Myb-like domain profile. 104 156 IPR001005 -
Tpr1g0247 224 SMART sant 108 158 IPR001005 -
Tpr1g0247 224 SMART sant 17 69 IPR001005 -
Tpr1g0247 224 PANTHER SYRINGOLIDE-INDUCED PROTEIN 1-3-1B 18 220 - -
Tpr1g0247 224 SUPERFAMILY Homeodomain-like 19 75 IPR009057 -
Tpr1g0247 224 ProSiteProfiles SANT domain profile. 112 160 IPR017884 -
Tpr1g0247 224 MobiDBLite consensus disorder prediction 82 115 - -
Tpr1g0247 224 Gene3D - 110 162 - -
Tpr1g0247 224 MobiDBLite consensus disorder prediction 91 115 - -
Tpr1g0247 224 SUPERFAMILY Homeodomain-like 105 160 IPR009057 -
Tpr1g0247 224 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 109 159 IPR006447 GO:0003677
Tpr1g0247 224 ProSiteProfiles Myb-like domain profile. 21 67 IPR001005 -
Tpr1g0247 224 MobiDBLite consensus disorder prediction 162 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g0247 Tpr-Chr1 2013847 2014785 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tpr1g0247 Myb_DNA-binding 8.1e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g0247 - - gmx:548010 242.662