Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g0239 ATGGGATCTGAAACTATGGTTCCAGAATGGGCATCGGAGCCTTGCATAATGGGAATTGACGAAGCTGGAAGAGGTCCTGTTCTTGGTCCTATGGTCTATGGTTCCTTATACTGTCCTCGCTCCTACCAGAATACCCTAGCTACTCTCAGTTTCGCAGATTCTAAGACACTGAAAGAAGACAAGAGGGAAGAATTATTTGAATCTTTGAAAACCAATGATTCTATTGGATGGGCTGTTGATGTCATTGACCCTAAAGAACTCTCTGCTAAAATGCTCAAGAAGAATAAGATAAACTTGAATGAGATATCACATGATTCTGCCATGGGTCTCGTTGATCGGGCGCTCAAAATGGGAGTGCTTCTAACTGAGGTTTATATTGATACAGTTGGAGATCCGGGGAAATATGAGACGAAACTTTCTAAAAAATTTCCATCTATTAAATTTGTGGTTGCAAAGAAGGCTGATAGTCTTTATCCTGTTGTCAGTGGTGCTAGCATAGTTGCAAAGGTCACAAGAGACCGAGCTGTGAGAGAATGGGTGCTTGATGAGACTGCTGATAACATGCACAGGAATTTCGGCTCTGGGTATCCTGGAGATCCTACAACCAAGTCTTGGCTAGAACATCACAAACATTCTATCTTTGGTTTTCCAACATTGGTTCGGTTTAGTTGGGGAACTTGCAGCTCATATTTTAAAGGTGGTGCTGAAGTCTTATGGGAGTCTGACTTGGATGAAGATGGCGGCAGCAATAATAATGGGAAGCGGCAACTGAAATTAAAAAATATGGGTTTTACCACATCCAAGAAGAGAAGTGAAGAAATAGAATCAAGTGGTAAAGGGCGTTCTAGGTTTTTTCAGACTCGGAAACTGGAGCACCTCAGTCATTTCTAA 891 0.4186 MGSETMVPEWASEPCIMGIDEAGRGPVLGPMVYGSLYCPRSYQNTLATLSFADSKTLKEDKREELFESLKTNDSIGWAVDVIDPKELSAKMLKKNKINLNEISHDSAMGLVDRALKMGVLLTEVYIDTVGDPGKYETKLSKKFPSIKFVVAKKADSLYPVVSGASIVAKVTRDRAVREWVLDETADNMHRNFGSGYPGDPTTKSWLEHHKHSIFGFPTLVRFSWGTCSSYFKGGAEVLWESDLDEDGGSNNNGKRQLKLKNMGFTTSKKRSEEIESSGKGRSRFFQTRKLEHLSHF* 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g0239 296 MobiDBLite consensus disorder prediction 265 281 - -
Tpr1g0239 296 Gene3D - 2 186 IPR036397 GO:0003676
Tpr1g0239 296 MobiDBLite consensus disorder prediction 249 281 - -
Tpr1g0239 296 ProSiteProfiles Ribonuclease (RNase) H type-2 domain profile. 14 236 IPR024567 GO:0004523
Tpr1g0239 296 TIGRFAM TIGR00729: ribonuclease HII 16 229 IPR004649 GO:0004523|GO:0016070
Tpr1g0239 296 Pfam Ribonuclease HII 17 227 IPR024567 GO:0004523
Tpr1g0239 296 MobiDBLite consensus disorder prediction 250 264 - -
Tpr1g0239 296 SUPERFAMILY Ribonuclease H-like 15 231 IPR012337 -
Tpr1g0239 296 Gene3D Ribonuclease hii. Domain 2 187 236 IPR023160 GO:0004523
Tpr1g0239 296 PANTHER RIBONUCLEASE 5 295 - -
Tpr1g0239 296 PANTHER RIBONUCLEASE H2 SUBUNIT A 5 295 IPR001352 GO:0003723|GO:0004523
Tpr1g0239 296 CDD RNase_HII_eukaryota_like 17 236 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g0239 1 296 Core DNA Replication Machinery Family AT2G25100 65.878 2.58e-150 420
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g0239 K10743 - gmx:100779875 503.442
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g0239 1 1971252 1974705 Tpr1g0239 1 1971252 1974705 ECH