Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g0237 ATGGATACTTCAAATCCTGCTGCGTTTGTCAATGCCCAGTCTCTTCCCAATTTCATTGGAAAGAAAGTAAGAACAGTGGTTCAGGTGAATCATTCTGACGGCTTGACAATCACAGGAAAATCCACCGATGACTCTCAGATAACTGTAAAAGGATTATCATCACAAGTCCCAGTCATGAATTATGTAGAAGTTATTGGCATTGCTGAAAGTAACAACTCTATCCATGCTGAAATTTTTACAGACTTTGGTGCCACATTTGATGTCAACTCTTACAATCAGTTATGCCAACTAGCAAATGGTCAATGCAAAAGTCTGTTTCTTTAA 324 0.3827 MDTSNPAAFVNAQSLPNFIGKKVRTVVQVNHSDGLTITGKSTDDSQITVKGLSSQVPVMNYVEVIGIAESNNSIHAEIFTDFGATFDVNSYNQLCQLANGQCKSLFL* 108
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g0237 107 PANTHER REPLICATION PROTEIN A 14 KDA SUBUNIT A-RELATED 1 107 - -
Tpr1g0237 107 PANTHER NUCLEIC ACID-BINDING, OB-FOLD-LIKE PROTEIN 1 107 - -
Tpr1g0237 107 Gene3D - 2 107 IPR012340 -
Tpr1g0237 107 CDD RPA3 6 106 - -
Tpr1g0237 107 Pfam Replication factor A protein 3 1 101 IPR013970 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Tpr1g0237 107 SUPERFAMILY Nucleic acid-binding proteins 5 101 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g0237 Tpr-Chr1 1958902 1960465 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g0237 1 107 Core DNA Replication Machinery Family AT4G18590 58.879 3.72e-42 132
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g0237 K10740 - gmx:100781484 162.54