Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g0236 ATGGATACTTCAAATCCTGCTGCGTTTGTCAATGCCCAGTCTCTTCCCAATTTCATTGGAAAGAAAGTAAGAACAGTGGTTCAGGTGAATCATTCTGACGGCGTGACGATCACAGGAAAATCCACCGATGACTCTCAGATAACTGTTAAAGGGTTATCATCACAAGTCCCAGTCATGAATTATGTAGAAGTTATTGGCATTGCTGAGAGTAACAACTCTATCCGCGCTGAAATTTTCACAGACTTTGGTGCCACATTTGATGTCAACTCTTACAATCAGTTATGCCAACTAGCAAATGGTCAATTCAAAAGTCTGTTTCTTTAG 324 0.4043 MDTSNPAAFVNAQSLPNFIGKKVRTVVQVNHSDGVTITGKSTDDSQITVKGLSSQVPVMNYVEVIGIAESNNSIRAEIFTDFGATFDVNSYNQLCQLANGQFKSLFL* 108
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g0236 107 Pfam Replication factor A protein 3 1 102 IPR013970 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Tpr1g0236 107 SUPERFAMILY Nucleic acid-binding proteins 5 106 IPR012340 -
Tpr1g0236 107 Gene3D - 1 107 IPR012340 -
Tpr1g0236 107 CDD RPA3 6 106 - -
Tpr1g0236 107 PANTHER REPLICATION PROTEIN A 14 KDA SUBUNIT A-RELATED 1 107 - -
Tpr1g0236 107 PANTHER NUCLEIC ACID-BINDING, OB-FOLD-LIKE PROTEIN 1 107 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g0236 Tpr-Chr1 1947237 1948364 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g0236 1 107 Core DNA Replication Machinery Family AT4G18590 60.748 3.38e-44 137
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g0236 K10740 - gmx:100781484 165.622