Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g0221 ATGGCTGCATCATCTTCCTCAGCATCACTGTTTGGATTCAGAGACGAGGATCCAAATCCGATGAAGCAACAACATTCCTTGCCACCATCTTCATCTGCTGCTCCTGCTGTTGCTGCTGCACCATCCCAGAAGAAAAAGAGAAACCAACCTGGAACACCAAATCCAGATGCAGAGGTGATAGCACTATCTCCCAAGACCCTAATGGCAACAAACAGGTTTATTTGTGAGGTATGCAACAAAGGGTTCCAAAGAGAGCAAAACCTACAGCTACACAGAAGAGGACACAATTTGCCTTGGAAGCTTAAGCAGAAGACTACAAAAGAGCCTAAGAGAAAGGTTTATCTCTGTCCTGAGCCCACATGTGTTCATCATGACCCTTCAAGAGCACTTGGTGACCTCACTGGCATTAAGAAACATTTCTCTCGCAAACATGGTGAGAAGAAATGGAAGTGTGATAAGTGCTCCAAGAAATATGCTGTTCAATCTGACTGGAAAGCTCATTCCAAAACTTGTGGTACTAGGGAATACAGATGTGATTGTGGCACTCTCTTCTCCAGGAGGGACAGTTTCATCACTCATAGAGCTTTCTGTGATGCATTGGCTCAAGAGGGTCCTAGACAGCCACCAATTACCCTACCTGGTGCCATTGGCTCTCACCTCTATGGAACCACAAGCAACACCATGGCTCTTAACTTATCACATGTTTCCCCACAAATGCACCACCAACAAGACCACCACAGTAACTCAGCTACCGATATCCTGCGCCTGGGCGCCTCTGCTAATCGAACGGGACAATTCGACCACCACAACATTCTCCAACCAACTTTCAGACCTAATAATTCTTTCTTCAGCAACAACAACATTCATGATCCAAACCAAAACTATGTTCCTGACCAAGGTTTAATGATGCAGCAGAATAATAACAGCAACAATAACAATCTCTTCAACATACCGAATTTCCTTTCGAGTAATAACAACAGTGCTACTACAAACACTAACAGTGGCAACAACTCATTCTCTGAACACTTGAATGTGAACAACAATGAAGGAACAAATTTCTTCACTGGTTCAGGTGGAACAACCAGTGCTCCATCATCACTCTTTAGCAATTTCCCTCAAGGAGGTGCAAATAGTAACATTAATGCTGCTGCTGCTGCTACTTCTATAGCTTCAATGTCAGCAACTGCACTTCTTCAAAAAGCTGCTCAAATGGGTGCAACTTCAAGCAATGGAAATGGAACTACCGCAACTTCGCTTCTGAAAAGCTTCGGAAACAATACCGGTAGCAATTCAGCTTCTTCTGGTGGTGGTGCTGAACATAACAGACAACTAATGAGCGGTGGAGGTGGTAGTGGGAACTATGGTTTTGGTGGTGGGAATGAACAGAGTAATTTGCATGATTTGATGAATTCTTTTGCTGCTACTGGGAATAGTTCAATATTTGAAACTGGAGGAGGGGGTGTAGGGCTTGGAAGTGGAGGTGGAGATAGCAGGCAGATGACTCGTGACTTTTTAGGTGTTGGTCAGATTGTGAGAAGCATGAGTGGTGCTGTTGGAGGACAAAGAGAACATGCAGCTGCTTTTAACTTGCCAGGTTCTTTGGAAGGAGATCAAAGAAACATTAATGCTGCAGCAGCATTTGGAAGAGGAGGAGGTGGTGGTGGTGGTGGAGGAGCTGGAGGAAATTTTCAGTGA 1695 0.4454 MAASSSSASLFGFRDEDPNPMKQQHSLPPSSSAAPAVAAAPSQKKKRNQPGTPNPDAEVIALSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEPKRKVYLCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCDKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAQEGPRQPPITLPGAIGSHLYGTTSNTMALNLSHVSPQMHHQQDHHSNSATDILRLGASANRTGQFDHHNILQPTFRPNNSFFSNNNIHDPNQNYVPDQGLMMQQNNNSNNNNLFNIPNFLSSNNNSATTNTNSGNNSFSEHLNVNNNEGTNFFTGSGGTTSAPSSLFSNFPQGGANSNINAAAAATSIASMSATALLQKAAQMGATSSNGNGTTATSLLKSFGNNTGSNSASSGGGAEHNRQLMSGGGGSGNYGFGGGNEQSNLHDLMNSFAATGNSSIFETGGGGVGLGSGGGDSRQMTRDFLGVGQIVRSMSGAVGGQREHAAAFNLPGSLEGDQRNINAAAAFGRGGGGGGGGGAGGNFQ* 565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g0221 564 Gene3D Classic Zinc Finger 127 203 - -
Tpr1g0221 564 PANTHER ZINC FINGER PROTEIN, PUTATIVE-RELATED 1 517 - -
Tpr1g0221 564 SMART c2h2final6 73 95 IPR013087 -
Tpr1g0221 564 SMART c2h2final6 149 169 IPR013087 -
Tpr1g0221 564 SMART c2h2final6 114 144 IPR013087 -
Tpr1g0221 564 Gene3D Classic Zinc Finger 52 121 - -
Tpr1g0221 564 ProSiteProfiles Zinc finger C2H2 type domain profile. 73 95 IPR013087 -
Tpr1g0221 564 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 1 517 - -
Tpr1g0221 564 SUPERFAMILY beta-beta-alpha zinc fingers 72 169 IPR036236 -
Tpr1g0221 564 Pfam Zinc-finger double-stranded RNA-binding 73 95 IPR022755 -
Tpr1g0221 564 MobiDBLite consensus disorder prediction 1 55 - -
Tpr1g0221 564 ProSitePatterns Zinc finger C2H2 type domain signature. 75 95 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g0221 Tpr-Chr1 1841476 1849952 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g0221 43 519 IDZ Gene Family AT2G02070 49.156 5.90e-135 404
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Tpr1g0221 zf-C2H2_jaz 3.4e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g0221 K25870 - gmx:100799389 536.569