Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g0215 ATGAGTAGTAGTTGTGGAAGAGATTGTGGTGGATCAGGAGGAGTGAGACCTTACATAAGATCAAAAGTTCCTCGTCTTAGATGGACTCCTGAACTTCATCGTTGCTTTGTTAATGCCATTCAAACTCTTGGTGGTCATCATAAGGCTACCCCTAAACTTGTTCTTCAGTTGATGGACATTAAAGGCCTCACTATTTCACATGTCAAGAGCCATCTTCAGATGTACAGAAGCATGAGAAGTGAAGTGGGAAAACAAGGTAGGCCAAGTAACCAGCATAAAAACCAAGGTTTTGAAGAGCATGATGATGGATGTGTTGATGAAGTGAATGATGTTAGTGTTGAGCATTCTTTGAGGAGAGAATCAGATTCTTCTAATTTCTCAAAAAGGGCTAGAATAGAGAGGGGAAGTTGTACAACAACTAATCTGCAGCAATGCAGCCAAAGAAGAATCTGTGATGATGCTGTAAAAAATCCTCTGTACTGCTTTTATGACTATGTACTGCAGCCTAATAATACCAATACCAATACCAATACCAATACCATTACCATGGGTAGTGAACATGATGATGATGATGAGCATAAGAATAATGGAGTAAAGGATGATGAACAAAAGTTTTGTGGATGGCAGAGGAAGCAGATACAACCACCCAAGTCTTCAGATTTTTGCATAAACCTCACTTCTTTCAAATCTCTAAACCAACAATCTGATTTCCCTCAGGATAGTAATGTAAATGACAGAAATACCCCTTCATGGGCAATTAATGGACTTACCAAAACTGACAGGGCACATGTAGAAGTTGAAGGTGAAGGAGGACATGAGTTGTCATTGTCTTTAACATTGCAAAATCCTTCACCTCAGACAAGTAATGTTTCTTATTCGGCCAGTGAAATCAGTGAGGCAATTTCATGCTATCCTCCTCCTCCTCCTCCTCATCCTAACCCTACTGCTCTTGGACTTGGTGGGTTTAGCAGCTACTACAAGGACTGCTCTAGAGCATCATCATCTTCTACTGTCAAAGAAAGGATTAATTTAGACCTTTCTTTAGCCATTTATGGCAATTGA 1062 0.3992 MSSSCGRDCGGSGGVRPYIRSKVPRLRWTPELHRCFVNAIQTLGGHHKATPKLVLQLMDIKGLTISHVKSHLQMYRSMRSEVGKQGRPSNQHKNQGFEEHDDGCVDEVNDVSVEHSLRRESDSSNFSKRARIERGSCTTTNLQQCSQRRICDDAVKNPLYCFYDYVLQPNNTNTNTNTNTITMGSEHDDDDEHKNNGVKDDEQKFCGWQRKQIQPPKSSDFCINLTSFKSLNQQSDFPQDSNVNDRNTPSWAINGLTKTDRAHVEVEGEGGHELSLSLTLQNPSPQTSNVSYSASEISEAISCYPPPPPPHPNPTALGLGGFSSYYKDCSRASSSSTVKERINLDLSLAIYGN* 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g0215 353 PANTHER MYB-LIKE DNA-BINDING DOMAIN, SHAQKYF CLASS PROTEIN 1 353 - -
Tpr1g0215 353 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 24 77 IPR006447 GO:0003677
Tpr1g0215 353 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 1 353 IPR044848 GO:0003700
Tpr1g0215 353 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 20 80 IPR017930 -
Tpr1g0215 353 MobiDBLite consensus disorder prediction 80 104 - -
Tpr1g0215 353 SUPERFAMILY Homeodomain-like 22 79 IPR009057 -
Tpr1g0215 353 Pfam Myb-like DNA-binding domain 26 76 IPR001005 -
Tpr1g0215 353 Gene3D - 23 80 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g0215 Tpr-Chr1 1761754 1765688 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g0215 5 79 G2-like Transcription Factor Family AT1G14600 75.000 3.38e-34 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Tpr1g0215 Myb_DNA-binding 1.8e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g0215 - - mtr:MTR_1g112370 452.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g0215 1 1761754 1765688 Tpr1g0215 1 1761754 1765688 ECH