Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g0208 ATGAACAATTTCATCATGCAAAACTTTACTGAGAGATTAAGACCTCTTGTTGGTTTGAATGGCTGGGATTACATTGTCTATTGGAAATTAAGTGATGATCAAAGGTTTCTTGAATGGTTAGGATGCTGTTGTAGTGGAAGTGAAAGTAATCAAAATGTTGGAGAAGAACATCTTTTTCCTATATCTTCATGTAGGGATACAATGTTTTCACATCCAAGAACAAAGTCTTGTGATCTTCTTTCACAACTTTCCACTTCCATACCTACAGATTCAGGGATTTATGCACAGGCTTTATTAACAAACCAGCCCAATTGGTTGAACTATCCTAATACCTTGGATCCAAACACTTTACAAGAAACAATTAATGGGACCCATGTTTTGATTCCAGTACCTGGTGGACTAGTTGAGCTCTTTGTCACTAAACAAGTTGGTGAAGATCAACAGGTAATAGATTTGATTACATCTCAAAGCATTGCAATGGTGGATCAAGAAGGAATGAACCATTCATTTGGCTTCAATTCAATGAGTAACATGCAATTAAATCAAGTTCTAGGTGATGAAAATGATGGAAATAAAACATTGAATCTTCCACATGACATTTCTGTAATGAACTTCATGCAACAGTTCAATTACAGTTACAATCAGCAACAAAACAGAATAAAAAACGACGAAAATTTCTCCGAAGAATACCATGGTTCATTCCTTCATGATCTTGAAAACAATAACATTCTCAAATCAAACACAGAAGAGGAAAATGATAACAAAAGTTTGATGACAGATAATAATCAGTATATGTTTGTTGATCCATTAGACTCAAAAAAGAAACAAGAAAATGGTGTTGGTAGATCAGATTCTATGTCAGATTGTAGTGATCAGAATGAAGAAGAAGATGATGGAAAATATAGGAGAAGGAGTGGAAAAGGAAACCAATCAAAGAATCTTGTTGCAGAGAGAAAAAGAAGGAAGAAACTGAATGATAGATTATATAATCTTCGTTCTTTGGTTCCGAGAATCTCAAAGCTTGATAGAGCTTCAATTCTTGGTGATGCTATTGAGTTTGTGAAGGATTTGCAGAAACAAGTGAAAGAACTTCAAGATGAGCTTGAGGAAAATTCAGACACAGGAACTGAAAGTAACTGCATTGTTAATGGAATTAACAATAATCAATATGTTGGTGGTGTTCAAGTTCAACCAGAGAATCCTAATAATAATGTTGGAAGAGCAGAACATGGTTTTCATGTTGGTAATGGCTATGTTTCAAAACAAAAGCAGGAAGATGTTGGTGCTGTTACTGATAAGCAGACACAGCAGATGGAGCCACAAGTGGAAGTAGCTCAGATAGATGGAAATGAGTATTTTCTGAAGGTGTTCTGTGAGCATAGGCCTGGTGGTTTTGTGAAATTGATGGAAGCTTTGAACACTCTAGGCATGGATGTAGTACATGCCACAGTTACTAGCCACAAGGGTCTTGTCTCAAATGTTTTCAAAGTGGAGAAAAAGGAGAGTGAAATAGTTGAGGCTGAAGATGTAAGAGATTCACTACTAGAGCTGACAAGAAACAAATCTACATGTTGGAGTCATGAGATGGCAACATCAACATCAGAGAATGGTGTGATCAGTAAGGACCAACATGATCACCAGCTCCACAATCACCAGATTAATGCTGCTGCCTATCATCCACATCAATTTCATAGTTAA 1698 0.3628 MNNFIMQNFTERLRPLVGLNGWDYIVYWKLSDDQRFLEWLGCCCSGSESNQNVGEEHLFPISSCRDTMFSHPRTKSCDLLSQLSTSIPTDSGIYAQALLTNQPNWLNYPNTLDPNTLQETINGTHVLIPVPGGLVELFVTKQVGEDQQVIDLITSQSIAMVDQEGMNHSFGFNSMSNMQLNQVLGDENDGNKTLNLPHDISVMNFMQQFNYSYNQQQNRIKNDENFSEEYHGSFLHDLENNNILKSNTEEENDNKSLMTDNNQYMFVDPLDSKKKQENGVGRSDSMSDCSDQNEEEDDGKYRRRSGKGNQSKNLVAERKRRKKLNDRLYNLRSLVPRISKLDRASILGDAIEFVKDLQKQVKELQDELEENSDTGTESNCIVNGINNNQYVGGVQVQPENPNNNVGRAEHGFHVGNGYVSKQKQEDVGAVTDKQTQQMEPQVEVAQIDGNEYFLKVFCEHRPGGFVKLMEALNTLGMDVVHATVTSHKGLVSNVFKVEKKESEIVEAEDVRDSLLELTRNKSTCWSHEMATSTSENGVISKDQHDHQLHNHQINAAAYHPHQFHS* 566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g0208 565 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 311 372 IPR036638 GO:0046983
Tpr1g0208 565 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 91 527 - -
Tpr1g0208 565 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 308 357 IPR011598 GO:0046983
Tpr1g0208 565 SMART finulus 314 363 IPR011598 GO:0046983
Tpr1g0208 565 Coils Coil 497 517 - -
Tpr1g0208 565 Pfam Helix-loop-helix DNA-binding domain 315 358 IPR011598 GO:0046983
Tpr1g0208 565 MobiDBLite consensus disorder prediction 271 319 - -
Tpr1g0208 565 CDD bHLH_AtAMS_like 311 381 - -
Tpr1g0208 565 CDD ACT_UUR-ACR-like 454 517 - -
Tpr1g0208 565 PANTHER TRANSCRIPTION FACTOR ABORTED MICROSPORES 91 527 - -
Tpr1g0208 565 Coils Coil 347 374 - -
Tpr1g0208 565 Gene3D - 297 373 IPR036638 GO:0046983
Tpr1g0208 565 SUPERFAMILY ACT-like 450 517 IPR045865 -
Tpr1g0208 565 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 11 155 IPR025610 -
Tpr1g0208 565 ProSiteProfiles ACT domain profile. 453 526 IPR002912 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g0208 Tpr-Chr1 1701696 1704957 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g0208 6 547 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G16910 47.443 2.16e-146 432
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Tpr1g0208 bHLH-MYC_N 2.8e-19 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g0208 - - aprc:113871920 748.043
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g0208 1 1701696 1704957 Tpr1g0208 1 1701696 1704957 ECH