Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g0202 ATGGAATTTGATGAATATGACTATTTAGAGAAAACAGTTGATAATTCTGAACTTAAGAATCACAACCAAATTACTAATAGTGGTGGGGATAGGATTAGGACTGTTAAATCTGAAGACAGAGTCCGTAGTCGTAGCTCCAAGCGTAGGGATTGTGAGAGGGATGATGGCGACGGCGATGATGATCTTAATGACCGTTTAAAGCATTCAAAATCCGGTGATGGTTATCGTGGTGGTTACGATAGGCAGAAAGAAAGAGGCTCACCTCGTAATCGTTCACGGTCTAGAGATGTAGACAAGGAGAGGGATAAGCTGAGAAGCTCTCAGGGTAATGGGGATAGGAGGAGGGATAGGGATAGAGACAGTGGAGACAAGTATAGAAGGGAGAGAGACAGAGACCGGGACGTTGAAAGAGACAGAAGGAATCGAAGGAGTGAGAGTGAAAGAGAAAGAGAGAAAGAGCGTTCTCAGCGAAGCAGAAGTAGACCCGAAAGGCATCGAAGTGATTTGGATAACGGTGATAGAGAGACAAGTCGTGACAGGGAATATAGTGACAAAGAAAGAAACCGAGATAAGGATTATAGAGACAGAGGAATGGCAAGGGATGCAAAGAAACCGGATAGAGAAAACAGACGGCATGAAGAGAAAAAGGAAGAAGCAGCAGAACCTGAGATTGATCCTGAAAGAGATCAAAGAACTGTGTTTGCTTATCAGATTTCTCTTAAAGCGGATGAGAGAGACGTTTATGAGTTCTTCTCAAGGGCTGGCAAGGTGCGAGATGTTCGCTTGATTATGGACCGCAATTCAAGACGTTCTAAAGGTGTTGGTTATATTGAGTTCTATGATGTCATGTCTGTCCCCATGGCAATAGCACTTTCAGGTCAACCTCTTCTTGGTCAACCAGTGATGGTGAAGCCATCAGAAGCAGAAAAGAATTTAGCTCAGTCTACGGCATCTGTTACCGGTGGACCTAATGGAAATTTAGGCCCTTATTCTGGGGGTGCAAGAAGGCTCTACGTTGGCAATCTGCATTCCAGTATTACTGAAGCTGATCTCCGTAGGGTGTTTGAAGCGTTTGGTCAAGTTGAGCTAGTCCAGCTGCCTCTTGATGACATTGGGCACTGCAAAGGTTTTGGCTTTGTGCAGTTTGCCCGCCTTGAAGATGCAAAAAATGCCCAGAGCTTGAATAGCCAATTGGAGATTGGTGGCAGGACAATCAAGGTATCGGCGGTTACTGATCAATCTGGAATGCAAGAATTTGGCGGAAATACTGGTGATATGGATGACGATGAAGGTGGTGGCTTGTCCTTGAATGCCTCTTCCCGAGCATTACTCATGCAGAAGTTGGATCGCAGCAGCAATGCATCAAGTATGATTGGTTTGCTGGGCAATTCTGCTGTCAACAATACAGGCCTTAATCTACAAGCAACTGGAAACATACCAGAAGCTGCTCTTTTGGGAGCCGCACCATTAGCTGGACATCCAGGTGGAGGTCTCCAAATTCCAATGACAAGTCCTTCTATTGATACAATTGGCGTTCCAAGTGAATGCTTATTGTTAAAGAATATGTTTGATCCCGAAAATGAGAAGGAACCAGACTTTGATTTGGATGTTAGAGAAGATGTTGAAGCAGAATGCTCTAAGTTTGGGAACTTAAGACATTTATGTGTTGTTAAGCAGAGTGCTGGATTTGTCTACTTACGATTTGAAAATACCCAATCTGCAATAAGTGCACAGCGGGCCTTACATGGAAGATGGTTTGCTGGGAAGATGATCACTGCAAGCTTTATGGTGACAGAGTCATACGAAGATAGATTCCCCCTCGAATAG 1827 0.4423 MEFDEYDYLEKTVDNSELKNHNQITNSGGDRIRTVKSEDRVRSRSSKRRDCERDDGDGDDDLNDRLKHSKSGDGYRGGYDRQKERGSPRNRSRSRDVDKERDKLRSSQGNGDRRRDRDRDSGDKYRRERDRDRDVERDRRNRRSESEREREKERSQRSRSRPERHRSDLDNGDRETSRDREYSDKERNRDKDYRDRGMARDAKKPDRENRRHEEKKEEAAEPEIDPERDQRTVFAYQISLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIALSGQPLLGQPVMVKPSEAEKNLAQSTASVTGGPNGNLGPYSGGARRLYVGNLHSSITEADLRRVFEAFGQVELVQLPLDDIGHCKGFGFVQFARLEDAKNAQSLNSQLEIGGRTIKVSAVTDQSGMQEFGGNTGDMDDDEGGGLSLNASSRALLMQKLDRSSNASSMIGLLGNSAVNNTGLNLQATGNIPEAALLGAAPLAGHPGGGLQIPMTSPSIDTIGVPSECLLLKNMFDPENEKEPDFDLDVREDVEAECSKFGNLRHLCVVKQSAGFVYLRFENTQSAISAQRALHGRWFAGKMITASFMVTESYEDRFPLE* 609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g0202 608 MobiDBLite consensus disorder prediction 19 229 - -
Tpr1g0202 608 SMART rrm1_1 336 408 IPR000504 GO:0003723
Tpr1g0202 608 SMART rrm1_1 516 594 IPR000504 GO:0003723
Tpr1g0202 608 SMART rrm1_1 232 304 IPR000504 GO:0003723
Tpr1g0202 608 Gene3D - 331 438 IPR012677 -
Tpr1g0202 608 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 515 598 IPR000504 GO:0003723
Tpr1g0202 608 CDD RRM3_RBM39_like 514 596 - -
Tpr1g0202 608 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 231 308 IPR000504 GO:0003723
Tpr1g0202 608 TIGRFAM SF-CC1: splicing factor, CC1-like family 112 604 IPR006509 GO:0003723|GO:0005634|GO:0006397
Tpr1g0202 608 SUPERFAMILY RNA-binding domain, RBD 335 601 IPR035979 GO:0003676
Tpr1g0202 608 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 335 412 IPR000504 GO:0003723
Tpr1g0202 608 SUPERFAMILY RNA-binding domain, RBD 227 333 IPR035979 GO:0003676
Tpr1g0202 608 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 337 406 IPR000504 GO:0003723
Tpr1g0202 608 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 539 591 IPR000504 GO:0003723
Tpr1g0202 608 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 241 300 IPR000504 GO:0003723
Tpr1g0202 608 Gene3D - 164 317 IPR012677 -
Tpr1g0202 608 MobiDBLite consensus disorder prediction 32 229 - -
Tpr1g0202 608 CDD RRM1_RBM39_like 232 304 - -
Tpr1g0202 608 PANTHER SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED 1 605 - -
Tpr1g0202 608 PANTHER CC1-LIKE SPLICING FACTOR 1 605 - -
Tpr1g0202 608 Pfam linker between RRM2 and RRM3 domains in RBM39 protein 426 533 IPR029123 -
Tpr1g0202 608 Gene3D - 510 608 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g0202 Tpr-Chr1 1660974 1671296 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g0202 232 398 Eukaryotic Initiation Factors Gene Family AT4G34110 28.402 1.06e-12 68.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g0202 K13091 - gmx:100789839 750.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g0202 1 1660974 1671296 Tpr1g0202 1 1660974 1671296 ECH