Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g0182 ATGCAATCTATTAGAAAATCATTCAAATCTTACAACAAAAAACATTCTACTACTAGGTTTTCCGATTCCGACCAAGAACAACAACTCCCTATTCTCCACCACCAAGAACACCACCACCGTCAACCTTATCCAATGGCCGGAGACGTCGTCGTGAAGATTGACGACGGCGGTGAGCCTTCTCGTGAAAACAAAATTTGGAGAGAATCGAGTTATGATTTCTGGAATGATACCGGTGACAATGTTAATGGTGAGGATAGTTTTGATTTCCGGAATAAAACTCAGGAGGATCCACCTTCGCAGCTAATCGGAAAGTTTTTGCATAAACAAAAAGCTTCCGGTGAGATGTCATTGGATATGGATTTGGAAATGGATGAGCTTCAGAATGAAGATGGTGATAGCGACGGAAAGTTAACTCCGGTTGAGGAATCTCCAACAATGATACAACGTGAGCTTAAGGTTTCTTTTGAGGAACCACCTCCTAATGCTATTGAATCTGTTAATGATTCTATTAGGAGAAGACATGTTAATGATTCACCTTCCACGTCTGAGTATCCTAGACCTCCATTTCCGCCTAATCATGACCGTCGAGGTCATTCTCCGTCTCCGGCCCCGCCCGGAAATGATTCTGAGGTTGTTAGGTGTACCTCTAATGGTTCCTTTCATCCTTCGTTTGAAAGGAACATTTCCATGCAGAGGAAATCCACATTGTTGAAAACCAAAACTAAGTCCAGATTAATGGACCCTCCAGATGAACCTGTGGATAGAAGATCAGGTCGGGTTGCTAAATCCGGTCAGCTTTTGTCTGGGTTTATTGGGAAGAAAGGCGACGAGGAAGAGGATGACCCGTTTATGGAAGAGGATTTTCCTGATGAGTATAAGAAAACACAATTTAGTCTTTGGATTCTTCTTGAATGGTTGAGTTTGATTTTGATTATTGGTGCATTAGTAACTACTTTGAGTGTTCCTTTTTTGAGGCAGAAGAATTTGTGGCAACTCAAATTATGGAAATGGGAGGTTATGATTCTTGTTCTAATATGTGGTAGATTGGTTTCTGATTGGTTTATTAGAATTGCTGTGTTTTGCATTGAAAGAAATTTTCTATTGAGAAAAAGGGTACTTTACTTTGTGTATGGTGTGAAGAAAGCAGTGCAAAATTGTGTTTGGTTGGGACTTGTTTTAATTGCATGGCATTTTCTCTTTGATGAGAGAGTTCAGAGAGAGACAAAAAGTAATTTCCTTCAATATGTCACAAAGGTTTTGGTTTGTTTCTTGGTGGGTACTTTGGTGTGGTTGTTGAAAACTTTAATGGTTAAGGTTTTAGCTTCTTCTTTTCATGTCAGTACATATTTTGATAGAATTCAAGAGTCACTGTTTAATCAATTCGTAATCGAAACACTTTCGGGGCCACCTTTGGTGGAAATTCGAAAGGCTGAAGAGGAAGAGGAAAGACTTGCTGAAGAGGTTCAAAAGTTGCAGAATGCTGGGGTTACCATACCTGCTGATCTTAGAGAGTCTGCATTTTCTACCCAGAGTGGAAGGTCCAAGAGTGGAATGCTTCCGAAAAGCCCTGTTGTTAAAAGTGCCAGGTTTTCAAGACCACTTTCGAAGAAATCTGATGATGGTGGAATTGGGAATGGTGGTGGGATAACTATTGATCACTTACATAAGCTGAATCCAAATAATGTGTCTGCTTGGAATATGAAAAGGTTGATGAATATGGTTCGGCACGGAGCACTTACTACATTGGATGAACAAATACTTGATTCCGGTGTTGATGATGAGCATGCCACACAAATCAGAAGTGAAAATGAGGCTAAAGCAGCGGCTAAGAAAATCTTTCAGAACGTTGCTAGGCGCGGCTGCAGGTTTATATACCCTGAGGACTTGATGCGTTTTATGCGAGAAGATGAAGCTATAAAAACCATAAATCTCTTTGAAGGAGCGATAGATACTGGGAGAATCAGTAAATCCGCCTTGAAAAATTGGGTGGTGAATGCCTTCAGGGAGAGGAGAGCACTTGCTTTGACATTGAATGACACCAAAACAGCAGTGAACAAACTTCATCGAATGCTCAATTTTTTAGTTGCCATTATCATACTGGTTATTTGGCTCTTGATATTGGAAATTGCCACCACCAAATTTCTTCTTTTTGTGAGCTCACAACTTGTCTTGGTTGCATTTATATTTGGAAACACCTGCAAAACCGTATTTGAAGCAATCATATTCTTATTTGTCATGCACCCATTTGATGTGGGAGATAGATGTGAAATTGATGCAACCCAGATGGTTGTAGAAGAAATGAACATATTGACCACCGTATTTCTTAGATACGATAATCTAAAGATAACGATACCTAACGCTGTTCTTGCTACTAAGGCCATAAATAATTTCTACCGTAGTCCTGACATGGGAGATGCTATTGAATTCCTTATCCATATAGCTACCCCAGCTGAAAAGGTTGCACTCATAAAACACAGAATAAATAGTTTCGTTGATAACAAGAAGGAGCACTGGTATCCTTCACCTTTTATAGTCTTGAAGGATCACGAACAAATGAACATGGTGAGATTGGCGATCTGGCCAACTCATAGAATGAACTTCCAAGACATGGGAGAACGATTTATCAGGAGGTCTCTTCTTATTGAAGAGTTGATAAAGATTTTCAAAGATCTCGACATTCAATACCGTCTCATGCCTCTTGACATTAACGTTAGAGCTGTGCCTACCACTTCTGACCGTCTTCCACCTAGTTGGACATCAATGACAAATTGA 2772 0.4001 MQSIRKSFKSYNKKHSTTRFSDSDQEQQLPILHHQEHHHRQPYPMAGDVVVKIDDGGEPSRENKIWRESSYDFWNDTGDNVNGEDSFDFRNKTQEDPPSQLIGKFLHKQKASGEMSLDMDLEMDELQNEDGDSDGKLTPVEESPTMIQRELKVSFEEPPPNAIESVNDSIRRRHVNDSPSTSEYPRPPFPPNHDRRGHSPSPAPPGNDSEVVRCTSNGSFHPSFERNISMQRKSTLLKTKTKSRLMDPPDEPVDRRSGRVAKSGQLLSGFIGKKGDEEEDDPFMEEDFPDEYKKTQFSLWILLEWLSLILIIGALVTTLSVPFLRQKNLWQLKLWKWEVMILVLICGRLVSDWFIRIAVFCIERNFLLRKRVLYFVYGVKKAVQNCVWLGLVLIAWHFLFDERVQRETKSNFLQYVTKVLVCFLVGTLVWLLKTLMVKVLASSFHVSTYFDRIQESLFNQFVIETLSGPPLVEIRKAEEEEERLAEEVQKLQNAGVTIPADLRESAFSTQSGRSKSGMLPKSPVVKSARFSRPLSKKSDDGGIGNGGGITIDHLHKLNPNNVSAWNMKRLMNMVRHGALTTLDEQILDSGVDDEHATQIRSENEAKAAAKKIFQNVARRGCRFIYPEDLMRFMREDEAIKTINLFEGAIDTGRISKSALKNWVVNAFRERRALALTLNDTKTAVNKLHRMLNFLVAIIILVIWLLILEIATTKFLLFVSSQLVLVAFIFGNTCKTVFEAIIFLFVMHPFDVGDRCEIDATQMVVEEMNILTTVFLRYDNLKITIPNAVLATKAINNFYRSPDMGDAIEFLIHIATPAEKVALIKHRINSFVDNKKEHWYPSPFIVLKDHEQMNMVRLAIWPTHRMNFQDMGERFIRRSLLIEELIKIFKDLDIQYRLMPLDINVRAVPTTSDRLPPSWTSMTN* 924
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g0182 923 Coils Coil 471 497 - -
Tpr1g0182 923 MobiDBLite consensus disorder prediction 183 198 - -
Tpr1g0182 923 MobiDBLite consensus disorder prediction 1 46 - -
Tpr1g0182 923 PIRSF Memb_At2g17000 22 923 IPR016688 -
Tpr1g0182 923 MobiDBLite consensus disorder prediction 29 43 - -
Tpr1g0182 923 Gene3D - 748 797 IPR023408 -
Tpr1g0182 923 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 921 - -
Tpr1g0182 923 SUPERFAMILY Sm-like ribonucleoproteins 738 797 IPR010920 -
Tpr1g0182 923 MobiDBLite consensus disorder prediction 119 210 - -
Tpr1g0182 923 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 5 921 IPR016688 -
Tpr1g0182 923 Pfam Mechanosensitive ion channel 690 893 IPR006685 GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g0182 Tpr-Chr1 1455790 1460954 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g0182 48 920 Mechanosensitive Ion Channel Family AT1G78610 58.233 0.0 952
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g0182 K22048 - gmx:100789882 1368.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g0182 1 1455790 1460954 Tpr1g0182 1 1455790 1460954 ECH