Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g0178 ATGCCTCCAAAATATAATTCTATTTCTGAAATTTCTCCATCCAAAGAAACATGGAATGTATTGGTTAGAATTGTTCGCATGTGGTTTGTTAAAGATATGAATAGAGATGCGCTGCCGTATTCTTTAGAAATGGATTTGATGGATAAGAAGGGTGAAAAGATCCATGCAACAGTTCGAAGAACATTAATTTACAAATATGAAAAGGAACTCACTGAGGGTCATGTGTATTCCATAAGCAACTTTAGTGTTGCCACTAATGTGGGATCATATAGAACCACCAATCATGCCTATAAAATTAATTTTCAATTTGGAACTAAAATCAAAAAATTTGATGACAAGTTGATACCTGCTAATATATACATGATCAGTGAACCTCATAAGATTTTTAATGATAACTATGATACCGATTATTTGATAGATGTGATGGGAGTCTTGAAAGTTGTGGGTGTTGAAAAGGTTTATTCTCGAAATGGAAGCGAATCAAAGATGATTCCTATAGAGCTGAACTACGATGGATTCTGTTTCAAAGTTACACTCTTTGGACCTTATGCGGACGAGTTGAACGCTTTTATCGCATCTGGTGAAGCAGATAATGCTGTCGTTGCTGTTTTGTTGGCCAAAGTCAAAATGTTCCAAGGTCAACCAACTATTCAAAACACCATATATGCCACTAAACTGGTTTTCAATCCTGTTTACACATCTGCGGTTGATCTCAAGAAAAGGATGCTTGGGAAAAGTGCTACTCCATCACCTGGTATTTCTCTATTAAAAGATACTTCTAAAGTTAGCAATGAGGATGCTTTTCTCAATTTGACGCCAATGGCATGA 828 0.3587 MPPKYNSISEISPSKETWNVLVRIVRMWFVKDMNRDALPYSLEMDLMDKKGEKIHATVRRTLIYKYEKELTEGHVYSISNFSVATNVGSYRTTNHAYKINFQFGTKIKKFDDKLIPANIYMISEPHKIFNDNYDTDYLIDVMGVLKVVGVEKVYSRNGSESKMIPIELNYDGFCFKVTLFGPYADELNAFIASGEADNAVVAVLLAKVKMFQGQPTIQNTIYATKLVFNPVYTSAVDLKKRMLGKSATPSPGISLLKDTSKVSNEDAFLNLTPMA* 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g0178 275 Pfam Domain of unknown function DUF223 46 138 IPR003871 -
Tpr1g0178 275 Gene3D - 5 113 IPR012340 -
Tpr1g0178 275 PANTHER REPLICATION FACTOR A 1, RFA1 20 272 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Tpr1g0178 275 SUPERFAMILY Nucleic acid-binding proteins 132 241 IPR012340 -
Tpr1g0178 275 CDD RPA1_DBD_A_like 22 107 - -
Tpr1g0178 275 SUPERFAMILY Nucleic acid-binding proteins 4 112 IPR012340 -
Tpr1g0178 275 CDD RPA1_DBD_B_like 140 242 - -
Tpr1g0178 275 PANTHER ANIMAL RPA1 DOMAIN PROTEIN 20 272 - -
Tpr1g0178 275 Gene3D - 114 248 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g0178 Tpr-Chr1 1410041 1411686 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g0178 2 240 Core DNA Replication Machinery Family AT5G45400 21.600 1.39e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g0178 - - mtr:MTR_2g048560 390.193