Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g0171 ATGGCGGATGAAAACAACACACTCTCACTCACACTAAAACAATCCATTCCCGACGATCCACAAAAAACAACAGCTACTCTTGATGACGTGGAACAAACTGTTATTAATAATATTGACGCTGAAACGACGTCGTTGAAGGACGTTGTAGTTGATGACGTGGCAGCCGGAGATTCTTCTTCTGTTAAACCTGCTTTGACGCCAGTGATATACGGTAAAAAGAAACGCGGAAGAAAGAGTTTTGCAGAAATTGAGAGGATGAAGAAAACGTTAGAGAATGGAACGAAAGAAGAAAATGGTAAAGGTGATGATGACGTGGCTACCGGAAAGAAGCGTGGTAGAAAGAGAAAAACGGAGAAGGAGGAAGATGATTCTGGTGAAGGTGATGACGTGGCGGTGGAAGATTCTGGTTCTATTGATGTGAGAAAGAGTGGACGGCCGAGGAAGAAGGTAACGTTTAATGAGGATGAGTATTGGTCAGATTTGGATGAGGAAGTGAAGACTAAGGGAAAACGTGGTAGGAAGAAGAATATTATTATTGCTGCTGAAGAAGAAGGGGAAAATCTGAAGAAAGTGGAGAAGAAGAAACCTGGTAGAAAAAAAAAGGAAATTTTTAGTATTGGAGAAGAATTTGAAGCTGAACAAAAGGAGGAGGAAGATGTGAAAAAAGTGGAGAAGAAGAAACCAGGTAGAAAAAGAAAGATGATTTCTGAAGAGGGGGAAAGTGGTGGTGTTGTAAAGGAAGAGAAGAACAAATCTGGTGGAAAAAATAAGATTGAAGATGAGAGTGATGTTTTGAAGGAAGATGATCAGGACCGTTGTGAAGTTGACACAACTTTATCTTTAGCTTATAACGGTGATTCTCTAAGGAAGAATGCTGCAACAAAGAAACCTGAAAACATTGAGGATGAACTTGTAGGTGAAAACAAGTCTGAGAGGGATGTTTTGAAGGAAGACGATCAGGACCGTGGTGAAATTGACACGACTTTATCTCTTGATAATAAACGTTATTCTCTGAGGAGGACTGCTGCAGTGAAGAAAATCAACCGAAAGGTGCCGAAGGTGCAAAAATCAACCGAAAGAACTAAGTGGATTGAACAAGAGTCCTTAATGTGCCATCAATGTCAAAGAAATGATAAGGGCAGGGTTGTCAGATGCACAAAATGCAAACGGAAAAGATATTGTGTATGCTGTATAAACAATTGGTATCCCCACTTGAAAGAGAATGAAATTGCCAAGGCATGTCCGGTGTGCTGTGATAATTGCAATTGCAAAGCATGCTTGCGATCATCTACACTTATCAAGGCAATTAAAAAAAGCAATCCGCAAACAAACAAAGATGATGAGGTTGAGCTCTCCAAGTATATGTTGAAAAAACTTCTTCCTTATTTAAGACGATTGGATGAAGAACAAATGGCTGAGAAGGAGATAGAAGCAAAGCGACAAGGGGTCTCACTTTCTGAGCTAAAAATAGAAGTAGCGGATTGCCCTAAAAATGAGCGGGTGTATTGTGACAACTGCAAAACGTCAATATTTGACTACCATAGAAGTTGTACGGAATGCCCTTTTGACATTTGTCTCATCTGTTGCCGCGAGCTTCGTGGTGGGAAGCTCCTAGGTGGTGCTGATCCAATTGAGTTTGAGTTTATCTTCCGAGGGCGTGATTATCTGCATGGCGGAAAAGAAGAGAGAATAAAGAATATTGAACCTCGTGCTGCTGCCCAGCCTGAAATTCGTGAATGGTCAAGATCTGGATGGCATGCATATAGTGATGGTAGCATTCCCTGTCCAAAAGCCAATAATAAGTGTAATCATGGTTTCCTTGAATTGAGAAGCATACTTGGACCAAATTGCATCTCTGAGGTAGTATGTAAAGCAAAAGAACTTGAAGAAACACTTAATCTACGAGATGCACAGGAGACTCTCGATAGTAGGTGTTCTTGTTTGAAGCCTCTTAAGAATGCAGATGATATACACAATCACAGAAGGAATGCAGCTTCTCGTGAAGATTCTAGTGACAATTTCTTATACTGTCCTAGGGCCATAGATCTACACAAAAAGGATTTTAAACATTTTCAATGGCATTGGGGCAAAGGGGAGCCAGTAATTGTCAGCAATGTACTTGAATGTACATCTGGTTTAAGCTGGGAACCACTTGTCATGTGGCGAGCATTCCGTCAGATAAGCAATACCAAGCACAAATCACTTTTGGATGTGAAGGCAATTGATTGTTTAGACTGGTGCGAGGCAGAAATTAATGTGCACCAATTCTTTACCGGGTACACAAAAGGTCGCTTGGATTGGGTTAAATGGCCACAGGTTTTGAAATTGAAAGATTGGCCTCCTTCTAATTTATTTGAGGAAAGTTTGCCTCGTCATTGTGCCGAGTTCATATCTTCCTTGCCGTATAAAGAATATACAGATCCTTTCAATGGTGTTCTTAACCTTGCTGTGAAGTTGCCTCCTGGTGCTCTAAAGCCTGACATGGGCCCAAAAACGTATATTGCTTATGGATTTGATCAGGAGCTTGGGCGGGGTGATTCTGTAACTAAGCTCCATTGTGATATGTCCGATGCAGTAAATGTGTTGACTCATATTGCTAAAGTGGAATTGGAATCTGAGGGCATTAAAGCCATTAAGAAACTGACACCACAACACCTAAATCAAGACAAGAGAGAGCTACATCTTCATTGTGATAATCAGGATGGAGAGACCAATGATTGTGTTCTTGATAAGTCATCGTCTTCCATAAATGCTGATGACGGCCTTTCTTCCGAAGTACAGCCCAAAGAGGTTGATGAAGTGACCGTGAAAAAAGGGAATAGTAATTTGGTAGGGGGGGATTCTTTGGATGGCGCTCTCTGGGATATATTTCGGAGAGAGGATGTACCTAAGTTGGAGGAATATCTAAAGAATCATTTCAGAGAGTTCAGGCACGTGCACTGCTCTCCTTTAAAGCAGGTTGTTCACCCTATCCATGATCAAACATTTTATTTGACTATTGAGCATAAGAAGAGGCTTAAGAAGGAGTATGGAATTGAGCCCTGGACTTTTGTTCAGAAGCTAGGAGATGCTGTTTTCATTCCAGCTGGTTGTCCCCACCAAGTCCGAAATCTGAAGTCATGCACCAAGGTTGCACTTGATTTTGTCTCTCCAGAAAATGTTGGTGAGTGTTTTCGTTTGACCGAGGAGTTTCGGAAACTTCCAATCAATCACAGGTCTGCGGAGGACAAATTGGAGGTGAAGAAAATGATTGTATATGCAATGCTTGATGTGGTCAAAAAGTTGGAGAAAGCAAGGTCTGGAGAAACCAAGGATCCAAAGTAG 3324 0.4128 MADENNTLSLTLKQSIPDDPQKTTATLDDVEQTVINNIDAETTSLKDVVVDDVAAGDSSSVKPALTPVIYGKKKRGRKSFAEIERMKKTLENGTKEENGKGDDDVATGKKRGRKRKTEKEEDDSGEGDDVAVEDSGSIDVRKSGRPRKKVTFNEDEYWSDLDEEVKTKGKRGRKKNIIIAAEEEGENLKKVEKKKPGRKKKEIFSIGEEFEAEQKEEEDVKKVEKKKPGRKRKMISEEGESGGVVKEEKNKSGGKNKIEDESDVLKEDDQDRCEVDTTLSLAYNGDSLRKNAATKKPENIEDELVGENKSERDVLKEDDQDRGEIDTTLSLDNKRYSLRRTAAVKKINRKVPKVQKSTERTKWIEQESLMCHQCQRNDKGRVVRCTKCKRKRYCVCCINNWYPHLKENEIAKACPVCCDNCNCKACLRSSTLIKAIKKSNPQTNKDDEVELSKYMLKKLLPYLRRLDEEQMAEKEIEAKRQGVSLSELKIEVADCPKNERVYCDNCKTSIFDYHRSCTECPFDICLICCRELRGGKLLGGADPIEFEFIFRGRDYLHGGKEERIKNIEPRAAAQPEIREWSRSGWHAYSDGSIPCPKANNKCNHGFLELRSILGPNCISEVVCKAKELEETLNLRDAQETLDSRCSCLKPLKNADDIHNHRRNAASREDSSDNFLYCPRAIDLHKKDFKHFQWHWGKGEPVIVSNVLECTSGLSWEPLVMWRAFRQISNTKHKSLLDVKAIDCLDWCEAEINVHQFFTGYTKGRLDWVKWPQVLKLKDWPPSNLFEESLPRHCAEFISSLPYKEYTDPFNGVLNLAVKLPPGALKPDMGPKTYIAYGFDQELGRGDSVTKLHCDMSDAVNVLTHIAKVELESEGIKAIKKLTPQHLNQDKRELHLHCDNQDGETNDCVLDKSSSSINADDGLSSEVQPKEVDEVTVKKGNSNLVGGDSLDGALWDIFRREDVPKLEEYLKNHFREFRHVHCSPLKQVVHPIHDQTFYLTIEHKKRLKKEYGIEPWTFVQKLGDAVFIPAGCPHQVRNLKSCTKVALDFVSPENVGECFRLTEEFRKLPINHRSAEDKLEVKKMIVYAMLDVVKKLEKARSGETKDPK* 1108
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g0171 1107 MobiDBLite consensus disorder prediction 134 156 - -
Tpr1g0171 1107 Gene3D Cupin 675 1074 - -
Tpr1g0171 1107 MobiDBLite consensus disorder prediction 73 156 - -
Tpr1g0171 1107 ProSiteProfiles JmjC domain profile. 808 1065 IPR003347 -
Tpr1g0171 1107 SUPERFAMILY Clavaminate synthase-like 660 1085 - -
Tpr1g0171 1107 MobiDBLite consensus disorder prediction 1 28 - -
Tpr1g0171 1107 SMART cupin_9 789 1065 IPR003347 -
Tpr1g0171 1107 Pfam JmjC domain, hydroxylase 952 1048 IPR003347 -
Tpr1g0171 1107 ProSiteProfiles Zinc finger RING-type profile. 371 417 IPR001841 -
Tpr1g0171 1107 MobiDBLite consensus disorder prediction 291 312 - -
Tpr1g0171 1107 MobiDBLite consensus disorder prediction 211 271 - -
Tpr1g0171 1107 MobiDBLite consensus disorder prediction 290 312 - -
Tpr1g0171 1107 MobiDBLite consensus disorder prediction 75 122 - -
Tpr1g0171 1107 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 90 1098 IPR045109 GO:0032454|GO:0033169
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g0171 Tpr-Chr1 1351810 1360243 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Tpr1g0171 JmjC 2.3e-14 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g0171 K15601 - gmx:100780803 1123.61