Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g0167 ATGGAAAACGACACCACCGCCACCAACAACGCCGCCGCCGCCGCAACCAACGCCACACCCAAACTTGCTTCAGGCGGAGTCAAATCCAACAACCACATCAATGAAGAAGAACATTCCAATTTGAATATCGAGGAAAATATACCAGAAAAAATAGAAGAAAAAATCGAAGATGAAAACGAAGAGGAACAACAACCAACTGGATCTGAAACCACCGCTCAACAACCTTCTAGAACACCTTTCACTAATCTCAGCCAGGTCGATGCTGACCTTGCCCTCGCTCGTACCCTTCAAGAGCAGGAAAGGGCATACATGATGCTGAGAATGAATAACGATGGAAGTGACTATGGAAGTTGGGAAGGTGGGAGCTATGTGCATGATGATGGAGATGATTTTGATGATCTACATGATGGCACTGATGAGGATGAGGATGAGGATGATGATGATGAAGATGATGATAACGAGGAGGAATATGAAGAAGATGAAGACGCATTTGATGTCCATGCTCATGGTACTGTTGGTGAACATGATAATCCTGTCATTGAATTTGACCCAGAGCTGTTTTCAAGCGATGAAGCCTATGCAAGAGCATTACAGGAGGCTGAAGAGAGGGAAATGGCAGCTAGACTGCTGGCTCTTGCTGGAATACATGATCAGGACACTGAGGACATGGAGGAACATGGTGCTAATTCTCAGGATGCTTGGGAGGATGTTGATCCAGATGAGCTTTCATATGAGGAACTACTGGCATTGGGTGAGGTAGTAGGAACTGAGAGCAGAGGTCTTTCGACTGATACTCTTGCCTGTTTACCTTCAATCATCTATAAGACGGGGAGTGATCAACACGGGAGCAATGATTCGTGTGTCATTTGCCGGGTGGACTATGAGGATGAAGAGTCCTTGACAATTCTTTCCTGCAAACATCTGTACCATCCTGAATGCATTAACAACTGGTTGAAAATAAATAAGGTTTGCCCTGTTTGCAGTACAGAGGTATCTACTTCTGGGAGCAACTCGTAG 1017 0.4523 MENDTTATNNAAAAATNATPKLASGGVKSNNHINEEEHSNLNIEENIPEKIEEKIEDENEEEQQPTGSETTAQQPSRTPFTNLSQVDADLALARTLQEQERAYMMLRMNNDGSDYGSWEGGSYVHDDGDDFDDLHDGTDEDEDEDDDDEDDDNEEEYEEDEDAFDVHAHGTVGEHDNPVIEFDPELFSSDEAYARALQEAEEREMAARLLALAGIHDQDTEDMEEHGANSQDAWEDVDPDELSYEELLALGEVVGTESRGLSTDTLACLPSIIYKTGSDQHGSNDSCVICRVDYEDEESLTILSCKHLYHPECINNWLKINKVCPVCSTEVSTSGSNS* 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g0167 338 MobiDBLite consensus disorder prediction 1 30 - -
Tpr1g0167 338 SUPERFAMILY RING/U-box 278 333 - -
Tpr1g0167 338 ProSiteProfiles Zinc finger RING-type profile. 287 328 IPR001841 -
Tpr1g0167 338 PANTHER E3 UBIQUITIN LIGASE BIG BROTHER-RELATED 31 336 - -
Tpr1g0167 338 Pfam Ring finger domain 285 327 IPR001841 -
Tpr1g0167 338 SMART ring_2 287 327 IPR001841 -
Tpr1g0167 338 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 252 334 IPR013083 -
Tpr1g0167 338 MobiDBLite consensus disorder prediction 65 85 - -
Tpr1g0167 338 MobiDBLite consensus disorder prediction 138 164 - -
Tpr1g0167 338 MobiDBLite consensus disorder prediction 1 85 - -
Tpr1g0167 338 PANTHER E3 UBIQUITIN LIGASE BIG BROTHER-RELATED 31 336 IPR043312 -
Tpr1g0167 338 MobiDBLite consensus disorder prediction 31 53 - -
Tpr1g0167 338 MobiDBLite consensus disorder prediction 138 162 - -
Tpr1g0167 338 CDD RING-H2_PA-TM-RING 287 327 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g0167 Tpr-Chr1 1331060 1337370 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g0167 76 231 C3H Transcription Factor Family AT3G19910 53.503 3.28e-35 127
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g0167 K19045 - gmx:100787418 431.024
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g0167 1 1331060 1337370 Tpr1g0167 1 1331060 1337370 ECH