Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g0160 ATGTCTTCTGGCGGCGATAGCGGCGGCGGCGCTGTTGGTAAGCTTTTCTTCTGCCACGTTTGCAGTCGGAGAGTTACCTGCTCCGATGATTCCGAACCTTTCTGCCCAATCTGCTTCCAAGGTTTTCTCGAAGAATGCAATCAAATTCCTGAACCTAACCCTAACCCTAGCTTTCACTTCAGCTTCAACAACGACGATTCTTCCGATACCGATTCCGATTTCCCTTTCCATCCATTCGCTCTTCTCCCTCTGTTGTTATCTTCTGCCTCAATTTCCAGAACCCGACCCGATTCAGAGAGTTTCGACCCGTTCACTTTCCTTCAGAATCACCTTAACGGCCTTCACGCCGATGGTGCTAACATTCAATTCGAAATCAATCATCCTTCTGAATCTGAACCAGGTGGTCGCGTTCCCTCTAGCTTTGGCGATTACTTTCTCGGTCCTGGCCTCGAACAATTGATTCAGCAACTCGCTGAGAATGATCCTAACCGTTACGGAACACCGCCGGCATCCAAAGAGGCGGTTAAGAATCTTCCAACGGTAACTGTTGATGATGAATTGTTGAACTCGGAATTGAACCAATGTGCTGTTTGTCAGGATGAGTTTGAGAAGGGTTTGCAGGTGAAGCAAATGCCTTGCAAGCATGTGTATCATGATGATTGCTTGCTTCCATGGCTTGAATTGCATAATTCTTGCCCTGTTTGTCGATATGAACTGCCAACTGATGATGCTGATTATGAGAATCGTGGTAGTGATAATGATGGCAATGGGTTGAGGTCTGTTGTTGATGGTAGCAGTACTGGTAGTGGTGCCGGCAGCAATGGTGGTGGTGGAGGGGGGAACAGACCTGTCCACAGGACTTTTAGAATATATCTGCGGTATCCTTTCGGTGACTCTGCTCAGGACTCTGGTGAAAGGGGATTAGGAAATGGGCAAGAGGATTTGGATTGA 951 0.4763 MSSGGDSGGGAVGKLFFCHVCSRRVTCSDDSEPFCPICFQGFLEECNQIPEPNPNPSFHFSFNNDDSSDTDSDFPFHPFALLPLLLSSASISRTRPDSESFDPFTFLQNHLNGLHADGANIQFEINHPSESEPGGRVPSSFGDYFLGPGLEQLIQQLAENDPNRYGTPPASKEAVKNLPTVTVDDELLNSELNQCAVCQDEFEKGLQVKQMPCKHVYHDDCLLPWLELHNSCPVCRYELPTDDADYENRGSDNDGNGLRSVVDGSSTGSGAGSNGGGGGGNRPVHRTFRIYLRYPFGDSAQDSGERGLGNGQEDLD* 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g0160 316 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 157 242 IPR013083 -
Tpr1g0160 316 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 12 300 - -
Tpr1g0160 316 PANTHER OS06G0101300 PROTEIN 12 300 - -
Tpr1g0160 316 SUPERFAMILY RING/U-box 174 242 - -
Tpr1g0160 316 ProSiteProfiles Zinc finger RING-type profile. 195 236 IPR001841 -
Tpr1g0160 316 CDD RING-H2_RNF126_like 194 236 - -
Tpr1g0160 316 Pfam Ring finger domain 193 236 IPR001841 -
Tpr1g0160 316 SMART ring_2 195 235 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g0160 Tpr-Chr1 1292599 1294864 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g0160 139 247 C3H Transcription Factor Family AT5G01980 48.624 4.69e-31 120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g0160 K11982 - gmx:100785289 373.629