Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tpr1g0148 | ATGTCGGAAGCACCATCTCAACCACCACCACCCGCCACCGAAACCCCTCCTCCATATTGGTGCTACCACTGCGACAAACGCGTCTCCGTCGAAACGGTCGCAAATCTCCCCGACCTAATCTGCGGCGATTGCAAAAACGGTTTCGTCGAATCCATCACTACACCTTCTCGTTCTCGTTCACCTTCCTCTTCCTCCGATGATCCCTATTTTGGTTCTCAATTTCTTCAGGTTCTTCGCCTAATCGCTCAATCGTCGCGTGAAGACGACGCGTCTCCTCCACCTCCTCCAAGTCGTTCACCGGAGAACGATTTCCTCAGGATCGAACTCGGTGGTTGGGACCACAACGACGAAGATAACGATGATGATGAATTTCATAACGACGGTGAAGGTGAAGATACCGAAGGTACCGTTGAGGAACAGGAAGATCGATCCGGAAACGAGGATCCACACGGGGACGATGAAGATATGAGACGAAGGAGACGCGATCTATTGCGTCATCGAATTAGGGATTTGGCGACCCGAACCCGAAGCATGCAGAATCGGATCTTGGATTGGGCGGAGATTCTAATGGGACTGGAAGATAATTCAATTGAGCTTCGTCTTCAGATGCCGGAATCGGACCGGTATGTCGGCAATCCGGAGGATTATGTTGATGCGGCGGAGTATGAGGCGTTGCTGCAGACTCTGGCGGAGAGTGATGGAAATGGAAGGAGAGGAGCTCCGCCGGCTTCAAAGTCAGCTGTGGAAGCATTGCCGACGGTGAAGATTGCGTCGGAGAGTGAGGTGGTTGCTTGTGCTGTATGTAAGGATATGCTCGGTGTTGGTGAATTGGTGAAGAGATTGCCTTGTGGGCATGAGTATCATGGAGATTGCATTATTCCATGGTTGAGTTGTAGAAATTCTTGTCCTGTTTGCAGGTTTGAGCTTCCAACTGATGATAAGGAGTATGAAGAAGAGAGAGCTTCGGGTTCGGGTCGTGGTGGAGCTTCCACCATTTGA | 999 | 0.5095 | MSEAPSQPPPPATETPPPYWCYHCDKRVSVETVANLPDLICGDCKNGFVESITTPSRSRSPSSSSDDPYFGSQFLQVLRLIAQSSREDDASPPPPPSRSPENDFLRIELGGWDHNDEDNDDDEFHNDGEGEDTEGTVEEQEDRSGNEDPHGDDEDMRRRRRDLLRHRIRDLATRTRSMQNRILDWAEILMGLEDNSIELRLQMPESDRYVGNPEDYVDAAEYEALLQTLAESDGNGRRGAPPASKSAVEALPTVKIASESEVVACAVCKDMLGVGELVKRLPCGHEYHGDCIIPWLSCRNSCPVCRFELPTDDKEYEEERASGSGRGGASTI* | 333 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tpr1g0148 | 332 | Pfam | zinc-ribbon | 19 | 52 | IPR039525 | GO:0061630 | |
Tpr1g0148 | 332 | SMART | ring_2 | 265 | 305 | IPR001841 | - | |
Tpr1g0148 | 332 | MobiDBLite | consensus disorder prediction | 139 | 158 | - | - | |
Tpr1g0148 | 332 | Pfam | Zinc finger, C3HC4 type (RING finger) | 265 | 305 | - | - | |
Tpr1g0148 | 332 | MobiDBLite | consensus disorder prediction | 53 | 71 | - | - | |
Tpr1g0148 | 332 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 230 | 312 | IPR013083 | - | |
Tpr1g0148 | 332 | MobiDBLite | consensus disorder prediction | 53 | 72 | - | - | |
Tpr1g0148 | 332 | MobiDBLite | consensus disorder prediction | 128 | 158 | - | - | |
Tpr1g0148 | 332 | SUPERFAMILY | RING/U-box | 260 | 312 | - | - | |
Tpr1g0148 | 332 | PANTHER | AMINOACYLTRANSFERASE, E1 UBIQUITIN-ACTIVATING ENZYME-RELATED | 33 | 323 | - | - | |
Tpr1g0148 | 332 | PANTHER | RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING | 33 | 323 | - | - | |
Tpr1g0148 | 332 | ProSiteProfiles | Zinc finger RING-type profile. | 265 | 306 | IPR001841 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Tpr1g0148 | Tpr-Chr1 | 1199117 | 1200663 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Tpr1g0148 | 176 | 318 | C3H Transcription Factor Family | AT5G01980 | 47.333 | 7.36e-35 | 130 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tpr1g0148 | - | - | gmx:100802200 | 473.396 |