Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g0148 ATGTCGGAAGCACCATCTCAACCACCACCACCCGCCACCGAAACCCCTCCTCCATATTGGTGCTACCACTGCGACAAACGCGTCTCCGTCGAAACGGTCGCAAATCTCCCCGACCTAATCTGCGGCGATTGCAAAAACGGTTTCGTCGAATCCATCACTACACCTTCTCGTTCTCGTTCACCTTCCTCTTCCTCCGATGATCCCTATTTTGGTTCTCAATTTCTTCAGGTTCTTCGCCTAATCGCTCAATCGTCGCGTGAAGACGACGCGTCTCCTCCACCTCCTCCAAGTCGTTCACCGGAGAACGATTTCCTCAGGATCGAACTCGGTGGTTGGGACCACAACGACGAAGATAACGATGATGATGAATTTCATAACGACGGTGAAGGTGAAGATACCGAAGGTACCGTTGAGGAACAGGAAGATCGATCCGGAAACGAGGATCCACACGGGGACGATGAAGATATGAGACGAAGGAGACGCGATCTATTGCGTCATCGAATTAGGGATTTGGCGACCCGAACCCGAAGCATGCAGAATCGGATCTTGGATTGGGCGGAGATTCTAATGGGACTGGAAGATAATTCAATTGAGCTTCGTCTTCAGATGCCGGAATCGGACCGGTATGTCGGCAATCCGGAGGATTATGTTGATGCGGCGGAGTATGAGGCGTTGCTGCAGACTCTGGCGGAGAGTGATGGAAATGGAAGGAGAGGAGCTCCGCCGGCTTCAAAGTCAGCTGTGGAAGCATTGCCGACGGTGAAGATTGCGTCGGAGAGTGAGGTGGTTGCTTGTGCTGTATGTAAGGATATGCTCGGTGTTGGTGAATTGGTGAAGAGATTGCCTTGTGGGCATGAGTATCATGGAGATTGCATTATTCCATGGTTGAGTTGTAGAAATTCTTGTCCTGTTTGCAGGTTTGAGCTTCCAACTGATGATAAGGAGTATGAAGAAGAGAGAGCTTCGGGTTCGGGTCGTGGTGGAGCTTCCACCATTTGA 999 0.5095 MSEAPSQPPPPATETPPPYWCYHCDKRVSVETVANLPDLICGDCKNGFVESITTPSRSRSPSSSSDDPYFGSQFLQVLRLIAQSSREDDASPPPPPSRSPENDFLRIELGGWDHNDEDNDDDEFHNDGEGEDTEGTVEEQEDRSGNEDPHGDDEDMRRRRRDLLRHRIRDLATRTRSMQNRILDWAEILMGLEDNSIELRLQMPESDRYVGNPEDYVDAAEYEALLQTLAESDGNGRRGAPPASKSAVEALPTVKIASESEVVACAVCKDMLGVGELVKRLPCGHEYHGDCIIPWLSCRNSCPVCRFELPTDDKEYEEERASGSGRGGASTI* 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g0148 332 Pfam zinc-ribbon 19 52 IPR039525 GO:0061630
Tpr1g0148 332 SMART ring_2 265 305 IPR001841 -
Tpr1g0148 332 MobiDBLite consensus disorder prediction 139 158 - -
Tpr1g0148 332 Pfam Zinc finger, C3HC4 type (RING finger) 265 305 - -
Tpr1g0148 332 MobiDBLite consensus disorder prediction 53 71 - -
Tpr1g0148 332 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 230 312 IPR013083 -
Tpr1g0148 332 MobiDBLite consensus disorder prediction 53 72 - -
Tpr1g0148 332 MobiDBLite consensus disorder prediction 128 158 - -
Tpr1g0148 332 SUPERFAMILY RING/U-box 260 312 - -
Tpr1g0148 332 PANTHER AMINOACYLTRANSFERASE, E1 UBIQUITIN-ACTIVATING ENZYME-RELATED 33 323 - -
Tpr1g0148 332 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 33 323 - -
Tpr1g0148 332 ProSiteProfiles Zinc finger RING-type profile. 265 306 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g0148 Tpr-Chr1 1199117 1200663 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g0148 176 318 C3H Transcription Factor Family AT5G01980 47.333 7.36e-35 130
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g0148 - - gmx:100802200 473.396