Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g0133 ATGCTTGATAATGTGGATAATATTCATCATTTCATCGACTCAACTTGGAGACTATGCACTGTTGTAGGTGGTTGGTTTTCTGGTTTAATTTCAAAACCTTGCAGAAAAGTGGTTGGCTCAGCATTTGATGGTTCTATTTTGGCCGAGGAAAGAGAAAATTATTATCTAGATTCCATGGACCAGTGTATATATATTAGTTCGTCGGATGATGAGTTGGAGGAGATCGAAGATCCCAGAAGGCTTCTCCCAAAATGGGCTGGTTCTGAAAGGAATTCAGATTCAAGAAGGGCAAATAATTCAAACGCGAGCTCTTCTAACATTTTTAATCATTCACAAGTTACGCCTCATAATCAACCTGGTCCCAGCAATGGAAGCACAAGTCAGCATCAGACAGTAAATTCCCGAATTTCTAATACTAATGGTGCCAATTATGAGAAAATGTCATCTCAACAAGCTTTCAACAGGACTCTTCCATCATCTTTTCAATCATCTGCAACAAGGTCTCTTCCACCTTCGTCATTTGCACCTAATAACAGATCAAACAATTTAAGCAGCAGCCAACATAATGATCCATACCGGAGTCGCCACCATGGCGTAGGACCTAACACGTCCAGTGAGAAGGGCTTTTTTCGTGACAATTTTGGCAGAGGCAATGATGGAGATCGTTTCATGAATCAGAATGGAGGGATCAGGTCTCTTCCTCCTTCTTTGATGCATGGAAAGGCTGTAGCTCCACCATTTGCCAGTTCTAGTGAATCTGCATACCATGCTGGAGCAGGTGATGAAAGGGCTTCTACAGCTGATGAGAGGCTAATTTATGAAGCAGCATTACAGGATCTCAGTCAACCCTTAAAAGAAGCCGATTTACCTGCTGGTATAATGTCTGTCCCGCTTATGAGACATCAGAAAATTGCATTGGCTTGGATGCTTCAGAGGGAAAACAGGAGTTTGCATTGCTTGGGGGGGATTTTGGCTGATGATCAGGGCCTTGGAAAGACAATTTCAACGATAGCTCTCATCCTAATGCAACGGCAATCACAGTCAAAATGGAAAACAGCTGACACATGCAACCATAAAGCTGAAGCCTTGAATTTGGATGATGATGATGATAATGGTTGTATTGATGTGGAAAAGATTAAAAATGAGGAAGAACCCAGTGATATAAAACCAATTACTGAAGCGAGCAGTTCAACACGGGCCCCAGGTAGGCAAAGGCCAGCTGCTGGTACACTGGTTGTCTGCCCTGCAAGTGTTCTTCGGCAGTGGGCCAGAGAGCTTGATGAGAAAGTTGGAGATGAAAAGCTCTCTGTTTTGATTTTTCATGGGGGCAGTAGGACAAAGGATCCTGTTGAACTTGCAAAATATGATGTTGTTCTCACAACATACTCTCTTGTGACTAATGAAGTTCCCAAGCAACAGTTAGTTGATGAGGAGGATATTGATGAAAAAGATGGGGACAAGTTTGGTTTATCCTCCGATTTTTCTGTTGGTAAAAAGAGGAAAAAGACATATAATGGAAGTAAGAAGGGTAAAAAAGGTAGAAAGGGAATAGACAGTTCTTCTTTCGATTGTGCTTCTGGTGCTCTTGGAAAAGTTGGTTGGTTTAGGGTTATTCTAGATGAAGCTCAAACGATAAAGAATCATAGGACTCAGATGGCCAGAGCTTGCTCCAGCCTTAGGGCCAAAAGAAGGTGGTGCTTGTCTGGCACACCTATTCAGAATACTATTGATGATTTATATAGCTACTTTAGGTTCCTGAAGTATGAACCTTATGCTGAGTATAAATCATTCTACAATACAATAAAAGTCCCAATATCCAGAAATTCAATTCAAGGTTACAAAAAACTTCAAGTAGTTTTGAGGGCCATAATGCTTCGTCGTACAAAAGGAACTTTGCTTGATGGCAAGCCGATAATCACTTTACCTCCTAAAACAATTAATCTGAGTAAGGTGGATTTCTCCTATGAGGAGCGGGCCTTCTACAAGAAGTTGGAAGCTGATTCACGTTCTCAATTTAAGGCATATGCGGCTGCTGGCACAGTAAATCAAAACTATGCAAATATCCTTTTAATGCTTTTACGTCTCCGTCAGGCTTGTGATCACCCACTTCTTGTTAAAGAATATAGTTCTGATCCTGTTGGGAAAGATTCTGTTGAAATGGCAAAAAAACTTCCAAAGGAGATGCTGATCAATCTGTTTAATAGTCTGGAAACAACTTCCGCTATATGTTGTGTCTGCAATGATCCACCCGATGACTCTGTTATTTCGATGTGTGGCCATGTCTTCTGTTATCAATGCGTATCAGAACATTTGACAGGTGATGATAATATGTGCCCGGCAGTTCATTGTAAAGAACAACTCGGTGAAGATCTTGTTTTCTCCAAAGCAACTTTGAGGAGTTGCATCTCTGATGATCTTGGTGGCAGTAGTTCTGGAAATTCGAGTCTTGTTGATTATTCACTAGTACAGAACAGTGACTACAGCTCATCTAAAATCAAAGCTGTCCTTGAGGTTCTGCAGTCAAATTGCAAATTGAAGACTCCTTTACTGAATTCCTCCGAAGGAAATAGAGATTCACTGCCTTCTGATGATTCAGATATTGAAGATTTTGATTCAGATGTAAAGGTTATAAAACACACAACAAGATATTCAGAGTGCACAACTGGAGGACCGCTAAAGGCTATAATTTTTTCTCAGTGGACTAGTATGTTGGACTTAGTTGAAACGTCAATGGAACAGGCTGGCGTAAAATACAGGAGACTTGATGGTAGGATGACTCTGACTGCGAGGGACAGAGCTGTTAAGGATTTCAATACTGATCCTGAGATTACTGTTATGCTGATGTCACTGAAAGCAGGAAACCTTGGTTTGAATATGGTTGCTGCATGTCATGTTATTCTTTTGGATCTTTGGTGGAATCCAACTACTGAAGATCAAGCTATTGACCGAGCTCATAGAATTGGACAGACTCGTCCTGTTACTGTGACACGGATCACCATTAAAGATACAGTTGAAGATAGAATACTGGCTCTTCAGGATGAAAAGAGAAAAATGGTTGCATCCGCTTTTGGTGAAGACCATGCTGGTGGCTCTGGAGCTAGGCTTACTGTTGATGATCTGAAATATCTTTTCATGGTCTAG 3141 0.4104 MLDNVDNIHHFIDSTWRLCTVVGGWFSGLISKPCRKVVGSAFDGSILAEERENYYLDSMDQCIYISSSDDELEEIEDPRRLLPKWAGSERNSDSRRANNSNASSSNIFNHSQVTPHNQPGPSNGSTSQHQTVNSRISNTNGANYEKMSSQQAFNRTLPSSFQSSATRSLPPSSFAPNNRSNNLSSSQHNDPYRSRHHGVGPNTSSEKGFFRDNFGRGNDGDRFMNQNGGIRSLPPSLMHGKAVAPPFASSSESAYHAGAGDERASTADERLIYEAALQDLSQPLKEADLPAGIMSVPLMRHQKIALAWMLQRENRSLHCLGGILADDQGLGKTISTIALILMQRQSQSKWKTADTCNHKAEALNLDDDDDNGCIDVEKIKNEEEPSDIKPITEASSSTRAPGRQRPAAGTLVVCPASVLRQWARELDEKVGDEKLSVLIFHGGSRTKDPVELAKYDVVLTTYSLVTNEVPKQQLVDEEDIDEKDGDKFGLSSDFSVGKKRKKTYNGSKKGKKGRKGIDSSSFDCASGALGKVGWFRVILDEAQTIKNHRTQMARACSSLRAKRRWCLSGTPIQNTIDDLYSYFRFLKYEPYAEYKSFYNTIKVPISRNSIQGYKKLQVVLRAIMLRRTKGTLLDGKPIITLPPKTINLSKVDFSYEERAFYKKLEADSRSQFKAYAAAGTVNQNYANILLMLLRLRQACDHPLLVKEYSSDPVGKDSVEMAKKLPKEMLINLFNSLETTSAICCVCNDPPDDSVISMCGHVFCYQCVSEHLTGDDNMCPAVHCKEQLGEDLVFSKATLRSCISDDLGGSSSGNSSLVDYSLVQNSDYSSSKIKAVLEVLQSNCKLKTPLLNSSEGNRDSLPSDDSDIEDFDSDVKVIKHTTRYSECTTGGPLKAIIFSQWTSMLDLVETSMEQAGVKYRRLDGRMTLTARDRAVKDFNTDPEITVMLMSLKAGNLGLNMVAACHVILLDLWWNPTTEDQAIDRAHRIGQTRPVTVTRITIKDTVEDRILALQDEKRKMVASAFGEDHAGGSGARLTVDDLKYLFMV* 1047
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g0133 1046 Gene3D - 796 1044 IPR027417 -
Tpr1g0133 1046 CDD SF2_C_SNF 893 997 - -
Tpr1g0133 1046 PANTHER HELICASE-LIKE TRANSCRIPTION FACTOR CHR28 93 1045 - -
Tpr1g0133 1046 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 288 627 IPR027417 -
Tpr1g0133 1046 SMART ring_2 743 781 IPR001841 -
Tpr1g0133 1046 Pfam Helicase conserved C-terminal domain 893 988 IPR001650 -
Tpr1g0133 1046 MobiDBLite consensus disorder prediction 156 210 - -
Tpr1g0133 1046 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 313 589 IPR014001 -
Tpr1g0133 1046 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 730 793 IPR013083 -
Tpr1g0133 1046 SUPERFAMILY RING/U-box 741 802 - -
Tpr1g0133 1046 MobiDBLite consensus disorder prediction 114 133 - -
Tpr1g0133 1046 SMART helicmild6 905 988 IPR001650 -
Tpr1g0133 1046 MobiDBLite consensus disorder prediction 83 105 - -
Tpr1g0133 1046 MobiDBLite consensus disorder prediction 156 189 - -
Tpr1g0133 1046 SMART ultradead3 294 606 IPR014001 -
Tpr1g0133 1046 Pfam SNF2-related domain 301 704 IPR000330 GO:0005524|GO:0140658
Tpr1g0133 1046 MobiDBLite consensus disorder prediction 382 406 - -
Tpr1g0133 1046 Gene3D - 498 640 IPR038718 -
Tpr1g0133 1046 Gene3D - 274 358 IPR038718 -
Tpr1g0133 1046 Pfam Zinc finger, C3HC4 type (RING finger) 743 779 IPR018957 GO:0046872
Tpr1g0133 1046 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 878 1041 IPR001650 -
Tpr1g0133 1046 CDD DEXDc_SHPRH-like 298 627 - -
Tpr1g0133 1046 Gene3D - 391 481 IPR038718 -
Tpr1g0133 1046 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 636 1045 IPR027417 -
Tpr1g0133 1046 ProSitePatterns Zinc finger RING-type signature. 758 767 IPR017907 -
Tpr1g0133 1046 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 93 1045 - -
Tpr1g0133 1046 ProSiteProfiles Zinc finger RING-type profile. 743 779 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g0133 Tpr-Chr1 1102726 1112435 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g0133 59 946 RAD5 or RAD16-like Gene Family AT1G50410 55.949 0.0 932
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Tpr1g0133 SNF2_N 5.9e-69 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g0133 - - gmx:100795142 1484.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g0133 1 1102726 1112435 Tpr1g0133 1 1102726 1112435 ECH